Pairwise Alignments

Query, 563 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 569 a.a., acyl-CoA synthetase (RefSeq) from Shewanella loihica PV-4

 Score =  206 bits (523), Expect = 3e-57
 Identities = 152/526 (28%), Positives = 260/526 (49%), Gaps = 30/526 (5%)

Query: 49  MSFGELDTLSKALGAWLQSRGLEPGARVAIMLPNIPQFAVTMCGVLRAGYTCVNVNPLYT 108
           +++ +LD +S      L+  G+  G  VA+ +PN PQF +   G+L+ G   + V+PL  
Sbjct: 59  LTYAQLDEMSTRFANVLRGLGVGQGDGVAVFMPNCPQFHIAFLGILKCGAVHMPVSPLSK 118

Query: 109 ARELEHQLKDSGATAIVILENFASTLEKVIERTPVKHVVMTSMGDLLGGLYGAWITIAVR 168
             EL HQL DS     +  +    T+  V +   ++H++ TS  D+        IT  + 
Sbjct: 119 EMELRHQLGDSQPKVALCYDALLPTMRPVCQELGIEHIITTSYTDVRPRA----ITAVLP 174

Query: 169 HLAKIVPPYKLPLSDGRSVTPFTQAITEGRGRPLGPDQSTLDSIAFLQYTGGTTGLSKGA 228
            L +I    K PL+DG  +  F +AI       L    + LD +A + YT GTTG+ KG 
Sbjct: 175 DLFEIP---KTPLADG--IIDFFEAIDNASKEVLDYIPA-LDDLAAINYTSGTTGMPKGV 228

Query: 229 VLTHRNIVAATLQAEAWFTPALTRAG-DLSKVNSIAALPLYHIFAL-TLCLLAIRQGSHM 286
           + THRN++       +++       G + + +  ++ LP + I    T  LL +  G+ +
Sbjct: 229 MHTHRNMIGTMA---SYYPVTFGEVGPEGTDLVMLSFLPEFWIAGEDTGLLLPLYSGATL 285

Query: 287 TLIPNPRDFNKFIAVLKKRPFHMLPAVNTLFNALLMHPEFKSLDFSTLFVSQAGGMAA-- 344
            L+    D   F+ ++     +M   +    + +L HP     D ++L            
Sbjct: 286 VLMAR-WDTKAFMELVHHHKVNMTIMLIDSVDEILNHPHLHQFDLTSLTTVPCISFIKKL 344

Query: 345 SEGTARKWFETTGCPMIE-GWGMSETCAIGTNN---PVSNTEFT---GTIGLPLPSIEIA 397
           +    ++W E TG  + E  +GM+ET    T      V + + +     +GLP+P  EI 
Sbjct: 345 NRDYRQRWRELTGTTLFEVAYGMTETHTCDTFTRGFQVDDMDLSFDPAFLGLPVPGTEIK 404

Query: 398 IKDD-EGNSLPVGESGELCIRGPNVMVGYYNQPAETAAAFTADGFMRTGDIAVMQEDGYS 456
           I D   G  +P+G  GE+ IR P ++ GY+N+P      F   G+ RTGD+ ++ E+G+ 
Sbjct: 405 ICDFVTGELMPLGVEGEIQIRTPTLLKGYWNKPDLNKNLFEEGGWYRTGDLGMITEEGFF 464

Query: 457 RIVDRKKDMILVSGFNVFPNELENVISLCPGVVECAAVGVPDEKQGEAIKVFVVRRDPAL 516
           R + R+K+M+ V+G +VFP E+E+++   P +  C  VG PDE++G+    FV  + P  
Sbjct: 465 RYLGRRKEMLKVNGMSVFPTEVESMLGQHPAIASCGVVGRPDERKGQVPVAFVTLK-PGF 523

Query: 517 --TEDAVLQYCHSQLTGYKRPKHIEFRESLPKTNVGKILRRELRTS 560
             T++++  +C + +  +K P+ I  +E LP T  GKI + +L  S
Sbjct: 524 DETQESLQAWCVNAMAIFKVPE-IRIQERLPMTATGKIRKVDLEKS 568