Pairwise Alignments

Query, 489 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Variovorax sp. SCN45

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  353 bits (906), Expect = e-102
 Identities = 197/405 (48%), Positives = 260/405 (64%), Gaps = 13/405 (3%)

Query: 1   MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLP 60
           ++ +FS L L   L   ++E+G    TPIQ+QAIP VL G+DV+  AQTGTGKTAAF LP
Sbjct: 4   LSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLP 63

Query: 61  LLQRMLKHENASTSPARHPVRALVLLPTRELADQVAQQIKLYAKYTNLRSTVVFGGIDMK 120
           L+QR ++      + ++  +RALVL+PTRELA QV   ++ YAK T L+   V+GG  MK
Sbjct: 64  LIQRFIEQPWQREANSKE-IRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMK 122

Query: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
            Q   L+ GV++L+ATPGRLLDH   K+  L +VE +VLDEADRMLD+GF+PDLQR+L  
Sbjct: 123 VQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRR 182

Query: 181 LPKQRTTLLFSATFSPEIKRLASSYLQNPITIEVARPNETASTVEQHFYSVSDDDKRRAL 240
           L   R TL FSATF  +IK +A   +++PI ++V   N TA TV+Q  Y V    KR  L
Sbjct: 183 LSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELL 242

Query: 241 KQIVRQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEV 300
             ++  +   Q  VF  ++ G   LA  L+ DG++  +++GDKSQ  R KAL  FKAG+V
Sbjct: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 301 DLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDAR 360
             L+ TDVAARGLDI  +  V N+D+PF AEDYVHRIGRTGRAG +GLAVS  S     +
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362

Query: 361 LVADIEKLIK--------KKIELEPVEFEEDRPR---GRINDGRR 394
           L A IE+L+         K  E  PV  EE+ PR   GR ++ R+
Sbjct: 363 LEA-IERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRK 406