Pairwise Alignments

Query, 489 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Variovorax sp. SCN45

Subject, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  289 bits (739), Expect = 2e-82
 Identities = 171/426 (40%), Positives = 248/426 (58%), Gaps = 19/426 (4%)

Query: 4   SFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQ-DVMGAAQTGTGKTAAFSLPLL 62
           SF NL L++ +  A+ + G+   TPIQEQAIP+++ G+ D++G AQTGTGKTAAF +P+L
Sbjct: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62

Query: 63  QRMLKHENASTSPARHPVRALVLLPTRELADQVAQQIKLYAKYTNLRSTVVFGGIDMKPQ 122
           + + +H   +        +AL+L PTRELA QVA++I        L    V+GG  +  Q
Sbjct: 63  ETIDEHSRNT--------QALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQ 114

Query: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
             EL++GV+++V TPGR+LDHI  +   L  V YVVLDEAD ML++GF+ D++ IL  + 
Sbjct: 115 IRELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVS 174

Query: 183 KQRTTLLFSATFSPEIKRLASSYLQNPITIEVARPNETASTVEQHFYSVSDDDKRRALKQ 242
             +  LLFSAT    I +LA +Y++    I+V R   T +  +Q FY +   DK   L +
Sbjct: 175 TDKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSR 234

Query: 243 IVRQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDL 302
           I+         +F  +K     +A  L   G     LHGD +Q +R K L  FK  ++++
Sbjct: 235 IIDTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINV 294

Query: 303 LVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDARLV 362
           LV TDVAARG+DI D+  V NFDIP N E YVHRIGRTGRAG  G A++F    ++ R  
Sbjct: 295 LVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVE-PSEFRKF 353

Query: 363 ADIEKLIKKKIELEPVEFEED---RPRGRINDGRRHWREEGEAGD----ARDVLD--QPR 413
             I+K+ K +I+ E V   +D     + +I  G +   E G+  D    A D+L+   P+
Sbjct: 354 KYIQKIAKTEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLEDADPQ 413

Query: 414 ERSSSL 419
           E  S++
Sbjct: 414 EVLSAV 419