Pairwise Alignments

Query, 380 a.a., Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1) from Variovorax sp. SCN45

Subject, 385 a.a., 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) from Shewanella oneidensis MR-1

 Score =  224 bits (571), Expect = 3e-63
 Identities = 139/379 (36%), Positives = 211/379 (55%), Gaps = 9/379 (2%)

Query: 7   EDQISLRDTARRFAEGEVLPRAAAIDREDKFDRVLYRGMAELGLFGVSLPEAAGGSGFDT 66
           EDQ    + AR+FA  E+ P AA  D E  F + + +   ELG   +  PE+ GG G   
Sbjct: 7   EDQRQFAELARQFATDELAPFAAKWDEEHHFPKDVIQKAGELGFCSLYSPESEGGMGLSR 66

Query: 67  VSTCLVMEELARCSGAIGNAFAIPVEAALFLHHHGNES-QKALIPGILDGSIVMATAMSE 125
           +   ++ EEL++   A      I   A   +   G E+ ++A    +  G ++ +  ++E
Sbjct: 67  LDASIIFEELSKGCTATTAMLTIHNMATWMVTTWGTETLRQAWSEPLTTGQMLASYCLTE 126

Query: 126 PDYGSDVASITTTARAVDDGWVLNGTKAWVTLGGVADRIMVFARTGKEAGHKSISCFMVD 185
           P  GSD AS+ T A    D +V++G+K +++  G  + ++V  RTG +AG K IS   + 
Sbjct: 127 PGAGSDAASLQTKAVPDGDEYVVSGSKMFISGAGSTELLVVMCRTG-QAGPKGISAIAIP 185

Query: 186 AHQAGVSRGKNEELLGMHGLEDCQIVLQDVHVPRTALIGAENEAFKTAMGNFNFSRLLMS 245
           A   G+  GK E+ +G +      +   +V VP   L+G E + F  AM   +  R+ ++
Sbjct: 186 ADSEGIIYGKAEDKMGWNAQPTRLVTFDNVRVPVANLLGEEGQGFTFAMKGLDGGRINIA 245

Query: 246 SMALGMAQAAMEDAVAYATTRKQFGQPIMNFQAIQFMVADMSTDIAAARLLIHHGARLQD 305
           + ++G AQAA+E A  Y   R+QFG+P+  FQA+QF +ADM+T++ AAR ++   A   D
Sbjct: 246 TCSVGTAQAALERASQYMNERQQFGKPLAAFQALQFKLADMATELVAARQMVRLAAFKLD 305

Query: 306 AGRSIAKEG----AQAKLFTTDMAMRHVSNALQIHGGNGYSRDYRIERIFRDVRLAQIYE 361
           +G     EG    A AK F TD+  +    ALQIHGG GY R+Y +ER FRDVR+ QI E
Sbjct: 306 SG---DPEGTAYCAMAKRFATDVGFQVCDAALQIHGGYGYIREYPLERHFRDVRVHQILE 362

Query: 362 GTNQIQRLIISRQVEKELA 380
           GTN+I RLII+R++  E A
Sbjct: 363 GTNEIMRLIIARRLLDENA 381