Pairwise Alignments

Query, 223 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 219 a.a., amino acid ABC transporter permease from Methanococcus maripaludis S2

 Score =  142 bits (358), Expect = 5e-39
 Identities = 72/205 (35%), Positives = 127/205 (61%), Gaps = 1/205 (0%)

Query: 12  DFLPILLQGAVVTVQVTVLAFLLSSALGLALALMK-LSPVRALSWAGSVIVNVIRGLPII 70
           D +P ++    VT+++T+++FLL+  + + +   + ++  + L       V V RG P++
Sbjct: 8   DNIPFIIDAVFVTLKITIMSFLLAVIIAVLVGSTRAMNFSKTLDLVLMAYVEVFRGTPLL 67

Query: 71  VQLFYIYFVLPEFGVQLTAFQAGVIGLGIAYSAYQAENFRAGIEAVDPGQREAAQAMGMR 130
           +QLF+IY+ LP  G+ +++  A V+GL +   AY +E  RA I++V  GQ EAA+++GM 
Sbjct: 68  IQLFFIYYGLPSIGITMSSTFAAVLGLSLNGGAYISEIIRAAIQSVPVGQFEAAESLGMG 127

Query: 131 SALIMRRVILPQAFRIALPPYGNTLVMMLKDSSLVSTITVAEMTRAGQLIASSTFQNMTV 190
               M  ++LPQAFRI +PP  N+   +LK+SSL+S + + E+TR GQLI + T +   +
Sbjct: 128 KIESMVYIVLPQAFRITIPPLVNSFSSILKESSLISVLAITELTRIGQLIYTRTSRPFEI 187

Query: 191 YTLVALLYLLMSLPLVYGLRRLEKR 215
           Y  + L+YL++   +  G  ++EK+
Sbjct: 188 YLTIGLIYLILVSIISIGSWKIEKK 212