Pairwise Alignments

Query, 391 a.a., Nucleoside ABC transporter, substrate-binding protein from Variovorax sp. SCN45

Subject, 343 a.a., putative lipoprotein from Phaeobacter inhibens DSM 17395

 Score =  149 bits (377), Expect = 9e-41
 Identities = 103/301 (34%), Positives = 154/301 (51%), Gaps = 14/301 (4%)

Query: 54  AAPLNIAFAYVGPVGDGGWSFAHDNARKALEKEFGDKIKTTFVESVPEGADAERVFRDFV 113
           A P+ +A  Y  PV     S  H  A  A  K+ GD I  TF E+     D  RV R++ 
Sbjct: 39  AEPIKVAGIYTVPVEQQWVSRIHVAALAA--KDRGD-ITYTFSENT-SNTDYPRVMREYA 94

Query: 114 SQGNKLIFGTTFGYMEPMLKVAADNKDVKFEHATGYKTSE---NMRTYDSRTYEGAYMAG 170
            QG+KLI G  FG      +VAAD  DV F   + +K      N+  +D+   + +Y++G
Sbjct: 95  EQGHKLIIGEIFGVEAEAREVAADYPDVAFLMGSSFKEDPALPNLAVFDNYIQDASYLSG 154

Query: 171 VIAGAMTKSNTLGVVGSVPIPEVLRNINSFTLGAQSVNPKITTKVVWVNEWFSPPKETEA 230
           ++AGAM++S  +G+VG  PIPEV R +++F  GA+ +NP IT +V ++  WF PPK  E 
Sbjct: 155 IVAGAMSESGNIGMVGGFPIPEVNRLMHAFMAGAREMNPDITFQVSFIGSWFDPPKAKET 214

Query: 231 ATALINGGADVLFQNTDSPAVLKTAQEKGKRAFGWDSDMTAYGPKAHLASAVINWTPYYV 290
           A A+I  GAD+L+   +   V   A+EKG  A G   D     P+   ASA+ ++ P   
Sbjct: 215 AFAMIENGADMLY--AERFGVSDAAKEKGVLAIGNVIDTQGDYPETVAASALWHFEPTLN 272

Query: 291 KATQEALDGKWTTGQ--AWWGVKEGAIDLV---SIAEDVPAEAKAKVDEVKKGLKDGSFV 345
            A  +  DG +T      +  +KEG   L    +    +P +A   +      +KDGS+ 
Sbjct: 273 AAIAKVRDGSFTAADYGVYSFMKEGGASLAPFGTFEGKIPQKALDLIASRTAAIKDGSYE 332

Query: 346 I 346
           +
Sbjct: 333 V 333