Pairwise Alignments

Query, 383 a.a., Nucleoside ABC transporter, permease protein 1 from Variovorax sp. SCN45

Subject, 365 a.a., sugar ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  218 bits (554), Expect = 3e-61
 Identities = 117/319 (36%), Positives = 187/319 (58%), Gaps = 1/319 (0%)

Query: 19  PILALLITVLIGVALFAALGKDPVKGLLVFFYEPIKNGYAIGELMVKATPLLIIALGLAV 78
           P  A+++ +  G AL A  G +    + V      ++  +I E+++KATPL++I +GL V
Sbjct: 34  PAAAVVLALACGAALLAFNGYEARAVIDVMVLGVFQDTRSIAEILLKATPLILIGVGLCV 93

Query: 79  CFRSNVWNIGAEGQFVFGAIAAGGVALLADKTTGQWIVVAILAAGILGGMVWAGIVAFLR 138
            FR ++WNIGAEGQF  GAIAA    +  D  T    V  ++ AG L G  WA I   L+
Sbjct: 94  AFRCSIWNIGAEGQFYAGAIAATAAGVSFDGLTAWIYVPLVMIAGALAGAAWAAIAGLLK 153

Query: 139 DKCNANEILVSLMLVYVATLLLGYMVFGPWKDPNGYNFPQTKTFEAVTQIPRLFKGSRVS 198
               A+EI+ ++ML Y+A ++  Y+V GP +D     +PQ+        +PR+   +R+ 
Sbjct: 154 VYFRASEIVTTIMLNYIAIIMTSYLVTGPLRDAAAA-YPQSARLVQEAWMPRILPPTRLH 212

Query: 199 IGLVIALVGAGALWVFLFRTRAGFAQQVGGLAPAASRYAGFSARRAVWIALLTSGGAAGL 258
           IG+++AL  A  +++FLFR+  G+A +V G++P A+RYAG S  R + +++  SG  AGL
Sbjct: 213 IGILVALALAVVMYIFLFRSTRGYALRVVGISPDAARYAGISVPRNIMLSICLSGSMAGL 272

Query: 259 AGALEVAGPLGQLTPYVPAGYGFAAIIVAFVGRLHPVGMIFSAILMSMFYIGGELAQSRL 318
           AGA E+AG   +L   +  GYGF  I VA +   +P+G +FS +L ++   G EL Q   
Sbjct: 273 AGAFEIAGVTRRLFQSISPGYGFEGIAVALLANNNPIGAVFSGLLFAILRSGSELMQITA 332

Query: 319 GLPKSLTGVFQGLLLFTLL 337
            +P+ L  V QG+++ +++
Sbjct: 333 QVPQVLVLVIQGIVILSVV 351