Pairwise Alignments

Query, 504 a.a., Nucleoside ABC transporter, ATP-binding protein from Variovorax sp. SCN45

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  263 bits (671), Expect = 1e-74
 Identities = 161/482 (33%), Positives = 259/482 (53%), Gaps = 14/482 (2%)

Query: 1   MTTPRLQLAHITKRYPAVVANSDISLAVQPGEIHAVLGENGAGKSTLMKIIYGSVKPDEG 60
           MT   L L+ I K +P V A    SL V PG + A++GENGAGKSTLMK++ G    D G
Sbjct: 1   MTQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAG 60

Query: 61  TVTFDGQAVNLRNPQQARALGISMVFQHFSLFDTLTVAENVWLGLDKSLQLAEVA-RSIT 119
           ++ + GQ V+ + P+ ++  GIS++ Q  +L   LT+AEN++LG + +     +    + 
Sbjct: 61  SIEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMH 120

Query: 120 AKASEYGLDIDPSRPVHT----LSVGEMQRVEIIRALLTNPKLLILDEPTSVLTPQAVLK 175
            KA +    ++      T    LS+GE Q VEI +AL    K++I+DEPT  LT      
Sbjct: 121 RKADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETES 180

Query: 176 LFQVLKKLSSEGCSILYISHKLHEIRELCTGCTVLRGGKVTGVCNPQNESNESLSRLMIG 235
           LF V+ +L  +GC I+YISH+L EI E+C   TVLR GK  G C   + + + L  +M+G
Sbjct: 181 LFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVG 240

Query: 236 SEPPPLKHR-PVHAGAVALRVERLSLAREDQFGVDLDGISFEVRAGEVVGVAGVSGNGQK 294
            +      R     G ++L V  L+       G  +  +SF ++ GE++GV+G+ G G+ 
Sbjct: 241 RKLEEQYPRIAAQQGDISLEVIGLT-------GSGVHDVSFTLKKGEILGVSGLMGAGRT 293

Query: 295 ELLYTLSGEDVRADAAMVRVFDKPAGRLRPRARRALGLHFVPEERLGRGAVPTLGLAHNL 354
           EL+  + G  + ++  ++ +  +    + P+   A G+ ++ E+R G G V  L +  N+
Sbjct: 294 ELMKVIYGA-LPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENM 352

Query: 355 LLTRGNAVGRGGWIRTGVLERHARSIIERFNVKAGGPHAAARSLSGGNLQKFIVGREIDA 414
            L   + + +G  IR           I  FN+K         +LSGGN QK  + + +  
Sbjct: 353 SLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMT 412

Query: 415 NPRLFIVSQPTWGVDVGAAALIRGEILALRDAGCAVLVVSEELDELFEISDRLHVIAKGR 474
            P++ I+ +PT GVDVGA   I   I   +  G ++++VS E+ E+  +SDR+ V+ +GR
Sbjct: 413 KPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGR 472

Query: 475 LS 476
           +S
Sbjct: 473 IS 474



 Score =  105 bits (262), Expect = 4e-27
 Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 20/231 (8%)

Query: 23  DISLAVQPGEIHAVLGENGAGKSTLMKIIYGSVKPDEGTVTFDGQAVNLRNPQQARALGI 82
           D+S  ++ GEI  V G  GAG++ LMK+IYG++  + G +  +G+ VN  +PQ   A GI
Sbjct: 271 DVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGI 330

Query: 83  SMVFQHFS---LFDTLTVAENVWLGLDKSLQLAEVARSITAKASEYGLDID--------- 130
           + + +      L   L+V EN+ L       L ++++ +  + ++  + +D         
Sbjct: 331 AYISEDRKGDGLVLGLSVKENMSL-----CALDQLSKGVQIRHADEVIAVDDFIRLFNIK 385

Query: 131 -PSRP--VHTLSVGEMQRVEIIRALLTNPKLLILDEPTSVLTPQAVLKLFQVLKKLSSEG 187
            PSR   +  LS G  Q+V I + L+T PK+LILDEPT  +   A  +++Q++ +  +EG
Sbjct: 386 TPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG 445

Query: 188 CSILYISHKLHEIRELCTGCTVLRGGKVTGVCNPQNESNESLSRLMIGSEP 238
            SI+ +S ++ E+  +     V+  G+++G         E L    +G  P
Sbjct: 446 MSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGRNP 496