Pairwise Alignments

Query, 351 a.a., TRAP transporter solute receptor, unknown substrate 3 from Variovorax sp. SCN45

Subject, 325 a.a., periplasmic C4-dicarboxylate transport protein from Sinorhizobium meliloti 1021

 Score = 61.2 bits (147), Expect = 4e-14
 Identities = 76/334 (22%), Positives = 131/334 (39%), Gaps = 30/334 (8%)

Query: 17  IAIAATAALALCAPATQAQDKPVQLKLSSWVPAQHPLNPALQAWADDIKKESGGTITAIL 76
           +A     A +    A  AQ     L+ S   P  +P    ++ + + +K+ + G  +  +
Sbjct: 7   LAAGLLVAASFMGNAANAQ---TVLRSSDTHPDGYPTVEGVKYFGELVKERTAGRYSVEV 63

Query: 77  FPSEQLGKAFDHYDMARDGIADFSYVNPGYQPGRFPVMAGASLPFLFSNGKEGSAAIDAW 136
           + S QLG+  D  +  R G+ + + V+     G        +LP+LF + +     +D  
Sbjct: 64  YHSAQLGEEKDTIEQVRSGVIELNRVSMAPFNGTVKESIVPALPYLFRSEEHMHKVMDGA 123

Query: 137 YRNYAAKEMKDVKYCFAFVHDPGT---FHSRKKIVVPGDVKGLKVRPATSTV-GQLITSL 192
             +   K  +         +D G    ++ +K I    D+KGLK R   S +   ++ +L
Sbjct: 124 IGDQIKKAFEGAGVVVLAFYDAGARSFYNKQKPINTVEDMKGLKFRVIQSDIFVDMVAAL 183

Query: 193 GGTNVQASAPESRDMLERGVADAITFPWGSIGLFGIDKVVKYHMDAPLYVTPFVWVMNKG 252
           G         E    +E GV D     + S       +V K +      + P V+VMNK 
Sbjct: 184 GANATPMPYGEVYSGIETGVIDGAENNFPSYDTAKHFEVAKNYSLDEHTILPEVFVMNKA 243

Query: 253 KYDAMSTAQKKVIDDHCTSE-------WAQKVAGPWADFEFAGHAKMAALPGHEIYKLTP 305
            +D ++   +++               WA KV    A  E AG AK+           TP
Sbjct: 244 AFDKLTPEDQEIFKQAAKDSVAKQRELWAAKVKESRAKVEAAG-AKIT----------TP 292

Query: 306 EQ---LDAWRKAAAPSEAQWAESVKKVGEDPKAV 336
           E+   +DA +           E +KK+ ED +AV
Sbjct: 293 EKQGFIDAMKPVYEKHVTD--EVLKKMVEDVRAV 324