Pairwise Alignments

Query, 351 a.a., TRAP transporter solute receptor, unknown substrate 3 from Variovorax sp. SCN45

Subject, 338 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score = 73.2 bits (178), Expect = 9e-18
 Identities = 71/312 (22%), Positives = 125/312 (40%), Gaps = 11/312 (3%)

Query: 12  LAPTAIAIAATAALALCAPATQAQDKPVQLKLSSWVPAQHPLNPALQAWADDIKKESGGT 71
           L    + +A   AL    PA  A+ +   +K +S     HP    ++ +A+ +K++SGG 
Sbjct: 5   LTKLTLGLAVPLALMTAGPAL-AEIRDQTVKFASANNKGHPQVTGMEKFAELVKEKSGGK 63

Query: 72  ITAILFPSEQLGKAFDHYDMARDGIADFSYVNPGYQPGRFPVMAGASLPFLFSNGKEGSA 131
           I   LFP   LG         + G+ + + +N G             LPFLF +G+E   
Sbjct: 64  IEVKLFPGGTLGGDVQTVSALQGGVIEMTVLNAGILASNVKEFGAVDLPFLFDSGEEADK 123

Query: 132 AIDAWYRNYAAKEMKDVKYCFAFVHDPG---TFHSRKKIVVPGDVKGLKVRPATSTVG-Q 187
            +D  +     + +           + G     ++R  +    D+KGLK+R   S +  +
Sbjct: 124 VMDGPFGTSLMERLPATGLVGVAYWELGFRNLTNNRHPVTKLEDIKGLKIRTIQSPIPVE 183

Query: 188 LITSLGGTNVQASAPESRDMLERGVADAITFPWGSIGLFGIDKVVKYHMDAPLYVTPFVW 247
           L  +LG   V     E    LE G  D    P  +I      +V KY         P + 
Sbjct: 184 LFNALGANAVPLPYTELYTALETGTVDGQENPSANIINAKFYEVQKYMTLTRHQYNPQIV 243

Query: 248 VMNKGKYDAMSTAQKKVIDDHCTS--EWAQKVAGPWADFEFAGHAKMAALPGHEIYKLTP 305
           +++K  +D ++  +K V+        ++ +KV+      + A   +     G E+ +L+ 
Sbjct: 244 LVSKKFWDGLNDEEKTVLQQAAVEARDFQRKVSRE----QDAAALEEIRKTGMEVSELSA 299

Query: 306 EQLDAWRKAAAP 317
           E+    R A  P
Sbjct: 300 EETQKLRDAVKP 311