Pairwise Alignments

Query, 345 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 335 a.a., putative sulfonate/nitrate transport system substrate-binding protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 46.6 bits (109), Expect = 9e-10
 Identities = 64/287 (22%), Positives = 109/287 (37%), Gaps = 22/287 (7%)

Query: 4   RFFLAAGTAALAPIAAPSVFAQGGGGKLTPLKFT--LDFRINGQTAPFFLALARGYYKDE 61
           R  + A   AL    A  + A     K  P K +  LD+ IN    P  +A   GY+KD 
Sbjct: 15  RGLVIALVCALVHTLAGPIAAARAEDKPAPAKVSVLLDWFINPDHGPLIVAQDLGYFKDA 74

Query: 62  GLDVSIDTGAGSVASITRIASGVYQLGLGDISSLVEFNAQNPGTPMVQAVYQYYNRAPFV 121
           GL+V +   A        +A+G   + +G    LV   A+  G P+++  +      P  
Sbjct: 75  GLEVDLVAPADPNDPPKLVAAGKADIAVGYQPQLVMQVAE--GLPLMR--FGTLVATPLN 130

Query: 122 IIGRKDRGVTADFKSLAGKKVAAAAVESTRRAWPMVARKQGMRADAFQWQTTDFSARDNV 181
            +     G       L G+KV  +           +    G++AD       +FS    V
Sbjct: 131 CLVVLKDGPIKSVADLKGRKVGFSVGGFEDALLGAMLDNAGVKADEVTLVNVNFSLSPAV 190

Query: 182 MVRGDVDAATYFHDSAVSLFARMKPEELSVLKY-------ADAGVNLYGNAILASSNLVA 234
            + G VDA        +  F   +  ++ +  +        + GV LY   +  ++  + 
Sbjct: 191 -ISGQVDA-------VIGPFRNFELNQMDLAGHPGTAFYPEEHGVPLYDELVFVTNIALK 242

Query: 235 QNPKVVAAFLRASNRAIVETFANPGPSIAAMRQREPILDEKIELERW 281
            +P++V AFL A  R       +P  +    +   P LD+++    W
Sbjct: 243 GDPRLV-AFLDAVERGTHYIVNHPEEAWTLFKAHSPDLDDELNHRAW 288