Pairwise Alignments

Query, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (287), Expect = 9e-31
 Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 6/211 (2%)

Query: 1   MDLDFSPLLDSWQYLLGGLGVTLLLSVLTAIGALVLGTALGLGRVYGAAWLRIPIVFYID 60
           M  DF  +L+    LL  LG TL ++    + AL+L   L   RV+    L      YI 
Sbjct: 1   MGFDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYIS 60

Query: 61  TQRAIPVLVILVWFYFAVP----ILTGISFHPFWAALMALTLHIAAYVAEIVRAGIESIR 116
             R  P+LV L   Y+ +P    +L G+    F AA++ LTLH AAY+AE +RA I  I 
Sbjct: 61  FFRGTPLLVQLFLLYYGLPQVFPLLVGLD--AFSAAVIGLTLHFAAYMAESIRAAIIGID 118

Query: 117 PGQIRAALALGMSRAQIVRKVVLPQALVRMLPAFGSVLSITIKDTAIATVIAVPELMKRA 176
             Q+ A+L++GM+ +Q +R+++LPQA    LP+  +     IK T++A  + V E+M +A
Sbjct: 119 RSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAKA 178

Query: 177 ETIAGQSYRPIEVFTVVMVIYFIILFPGTRL 207
           +  A  S+R  E F  V +IY++++   TRL
Sbjct: 179 QMEASSSFRFFEAFLAVALIYWVVVLVLTRL 209