Pairwise Alignments

Query, 413 a.a., D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) from Variovorax sp. SCN45

Subject, 468 a.a., Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) from Rhodospirillum rubrum S1H

 Score =  146 bits (368), Expect = 1e-39
 Identities = 93/287 (32%), Positives = 152/287 (52%), Gaps = 4/287 (1%)

Query: 25  PAFAASHAAKPAAHKKPAAAAPAQAPVAGQSAVAGGPP-ALPAKAWLLMDFDSGEVLASA 83
           P   +S  A   A +  A      A +A    + G P  A    A +++D  +G VL + 
Sbjct: 5   PELPSSGRAGSGATEPAAGRLRILAMLAVVFLLLGLPTQAFAGYASIVVDASTGRVLQAR 64

Query: 84  NPDEPLPPASLTKMMTSFLVEQALRSGKLKKDDLVSVSQNAWCRGSSTESCMYLPLNSQA 143
           N D    PASLTKMMT +L+ +A+ +GK   +  + VS+ A    +   S + +   +  
Sbjct: 65  NADMRNYPASLTKMMTLYLLFEAIDNGKYTLESRLPVSKWA---ANQAPSKLGVAAGTGI 121

Query: 144 TVIDILRGIIVQSGNDASKAIAEHMAGTEEGFAKLMNAEAQRLGMTHTHFVNSTGLPDPD 203
            V   ++ ++ +S ND +  IAE + GTE  F+ LM  +A  LGM+ T F N++GLP+  
Sbjct: 122 KVEHAIKALVTKSANDVAVVIAEALGGTEANFSALMTRKAAALGMSQTTFRNASGLPNNG 181

Query: 204 HKSSARDLAILARAIIRDSSEYYPIYAEREFKYNGIKQGNRNALLYTDPTVDGLKTGHTQ 263
             ++ARD+A+L+ A+IR    +Y  +A + F++        N ++   P  DGLKTG+ Q
Sbjct: 182 QMTTARDMAVLSMALIRHFPNHYRFFATQSFRFGNRTITTHNHVVREYPGADGLKTGYIQ 241

Query: 264 EAGFCLVTSSKRNGMRLITVILNTNSAQARADETRALLGWGYGNFEK 310
            +GF + +S+ RNG RL+ V+    +A+AR  +  ALL  G+    +
Sbjct: 242 ASGFNVASSAVRNGRRLVAVVFGGQTARARDTQMMALLDEGFATLAR 288