Pairwise Alignments

Query, 413 a.a., D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) from Variovorax sp. SCN45

Subject, 321 a.a., D-alanyl-D-alanine endopeptidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 97.1 bits (240), Expect = 7e-25
 Identities = 89/324 (27%), Positives = 152/324 (46%), Gaps = 37/324 (11%)

Query: 9   LPLAFAIATGALVSGTPAFAAS-HAAKPAAHKKPAAAAPAQAPVAGQSAVAGGPPALPAK 67
           + +++ + +  LV  +   AA+ H+A  A+    + A  A  P    +        + A 
Sbjct: 1   MKISYLLGSFILVCSSLTVAATAHSADSASVTTKSTATKATTPKKAHTK-----QEVAAN 55

Query: 68  AWLLMDFDSGEVLASANPDEPLPPASLTKMMTSFLVEQALRSGKLKKDD--LVSVSQNAW 125
           + L++D  + E+L S+NPD   P AS+TK+MT+ +   A    KL  D+   +++     
Sbjct: 56  SALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLDA----KLPMDEKLTINIKDTKE 111

Query: 126 CRGSSTESCMYLPLNSQATVIDILRGIIVQSGNDASKAIAEHMAGTEEGFAKLMNAEAQR 185
            RG  +     + + S+ +  ++L   ++ S N A+ ++A H  G  + F K MNA+A+ 
Sbjct: 112 MRGVYSR----VRIGSEISRKEMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKA 167

Query: 186 LGMTHTHFVNSTGLPDPDHKSSARDLAILARAIIRDSSEYYPIYAEREF----------- 234
           LGM ++ FV  TGL    + SSARDL +L +A     S+ YP+  +              
Sbjct: 168 LGMKNSRFVEPTGL-SAKNVSSARDLVVLLKA-----SQGYPMLGQLSSTEKKTVTFGKP 221

Query: 235 KYNGIKQGNRNALLYTDP-TVDGLKTGHTQEAGFCLVTSSKRNGMRLITVILNTNSAQAR 293
           KY+ +   N N L+Y D   +   KTG T  AG CLV  ++    ++  V+L+       
Sbjct: 222 KYS-LDFRNTNRLVYKDNWDIHLTKTGFTNAAGHCLVMRTEMAKRKVAFVVLDAKGKYTH 280

Query: 294 ADETRALLGWGYGNFEKATPIQSN 317
             +   L  W      K TPI ++
Sbjct: 281 MADANRLRNW--LETGKVTPIPAD 302