Pairwise Alignments

Query, 614 a.a., DUF3701 domain / Site-specific tyrosine recombinase from Variovorax sp. SCN45

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 82/319 (25%), Positives = 122/319 (38%), Gaps = 65/319 (20%)

Query: 291 STQRSYRKEAERLLLWSVLERGKALSSLTREDAAAYRAFLARPPAAWCGPRHHQRWSPMW 350
           +T  SYR +  +LL W    +              YR        ++ G + +Q W    
Sbjct: 28  NTVASYRNDLSKLLEWMAQNQ--------------YRLDFI----SFAGLQEYQSWLS-- 67

Query: 351 RPLEGPLTPVALRQALVILRSLFAFLTRQGYVTGNPFDETPLPSQDGQPLGSNRTLSFAQ 410
              E    P +  + L  +R LF +L R+     +P   + L      P    + LS AQ
Sbjct: 68  ---EQNYKPTSKARMLSAIRRLFQYLHREKVRADDP---SALLVSPKLPTRLPKDLSEAQ 121

Query: 411 WDHIDARLRAHGDTEAARRLRRG--MRWLYATGLRLAEIASVRCGNLHSRHEATSGDGSA 468
              ++A L A  D ++   LR    +  LYATGLR+ E+ S+   N+  R          
Sbjct: 122 ---VEALLSAP-DPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQ--------- 168

Query: 469 PPGWLLSVTGREGERREVPVALELIEELQEELARHGFDRQVDAPGNRDVPVLARFGTGAE 528
               ++ V G+ G+ R VP+    IE ++  L +            R +      G    
Sbjct: 169 ---GVVRVMGKGGKERLVPMGENAIEWIETFLQQ-----------GRSL----LLGEQTS 210

Query: 529 QPVAWSSSGLYQAIKAFLARVARDLDAADAEHLRKASTHWLRHTHGAHALQGRAGRAPLP 588
             V  SS G     + F  R+      A  + + K S H LRH    H L   A      
Sbjct: 211 DIVFPSSRGQQMTRQTFWHRIKHYAVIAGID-VEKLSPHVLRHAFATHLLNYGA-----D 264

Query: 589 LAVVQNNLGHALPSTTSMY 607
           L VVQ  LGH+  STT +Y
Sbjct: 265 LRVVQMLLGHSDLSTTQIY 283