Pairwise Alignments

Query, 1166 a.a., Two-component system sensor histidine kinase from Variovorax sp. SCN45

Subject, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  221 bits (563), Expect = 3e-61
 Identities = 211/811 (26%), Positives = 347/811 (42%), Gaps = 135/811 (16%)

Query: 260  KILAFFSRHLGTSVGAMYVRERHGPLRRASSYGFSSAAEATPQVFSPTESLVGQAAAERR 319
            ++  F   H    +  +Y+ + +G L R +  G S +A+      + T   V ++    +
Sbjct: 329  QVTQFLLHHFPVELIGLYLYQ-NGVLTRIAGVGQSESAQRDYSDPTTTHCSVLRSG---K 384

Query: 320  RMVIEPVTADYLKVNSGLGEMTPQAVLLLPVASDGMVNGVIELGLPGALDERGSQLLDVV 379
               ++ +  ++  V++  G +    V  LP+  +     ++ELG  G L  +    L  +
Sbjct: 385  PYAMKSLNGNFQVVSTS-GVIALNEVYYLPLQVNNQPIALLELGTVGMLTMQQYHWLSQM 443

Query: 380  ADDIGSSLAAARYREQLQDVLAETQQLNEELQVQQEELRTA------------------- 420
             DD+  ++  ++  EQ +  LAE + L E+ Q+ QE L                      
Sbjct: 444  LDDLSVAIQLSQNAEQQR--LAERKVL-EQSQLNQEILDATPNPMYCLSADGKFLTVNAK 500

Query: 421  ---------NEELEEQSRALRASQAMLENQQAELEQTNSQLSERTEALDQRNTALRR--- 468
                     NE ++++ + +  ++       A    T  Q S+  E      T ++R   
Sbjct: 501  FLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREML 560

Query: 469  -VQRDLEDRAD--------------------ELQRA-------SRYKSEFLANMSHELRT 500
              +    DRAD                    EL++A       S+ K +FLANMSHE+RT
Sbjct: 561  VYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRT 620

Query: 501  PLNSALILAKLLGDNPQGNLSPEQVKFAESIYSSGNDLLVLINDILDISKVEAGKLEVVP 560
            P+N+ L +A L  + P   L   Q K+   I  S  +LL +INDILD SK+EAGKL V  
Sbjct: 621  PMNAILGMAHLALNTP---LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVER 677

Query: 561  EDVPLRRLAESLETTFRPLAMQKNLSFRLDIRPDAPGSLVTDSQRVEQILKNLLSNALKF 620
             D  L  + +++       A +K + F +DI P  P  L+ D  R+ Q++ NL  NA+KF
Sbjct: 678  IDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKF 737

Query: 621  TDRGEVALVVS----GTADGGAAFAVSDSGIGIDPQQHELIFEAFRQADGTTSRRYGGTG 676
            T +GE+ L               FAV D+GIGI   + + +F+AF QAD + +R+YGGTG
Sbjct: 738  TSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTG 797

Query: 677  LGLSISRDLTQLLGGTLAVQSQPGQGSTFVLQLPAKAPQASGNASATQSPIYTPKPAHAP 736
            LGLSIS+ L +L+GG + V S+ G+GSTF   +        G   A    I   +P H  
Sbjct: 798  LGLSISKQLVELMGGQITVHSEEGKGSTFEFSV------VCGLQDAKMRDI--SQPVHG- 848

Query: 737  VGQAPAAPATPLAPQPPSPVPAPQFADDRSLPRDQVRRVLVIEDEPQFAHILYDLAHELG 796
                                     AD         +RVLV++D     HIL  L   + 
Sbjct: 849  ------------------------LAD---------KRVLVVDDNDSARHILDSLLTAMR 875

Query: 797  YRCLVAHGAADGFELATQFVPDAILLDMRLPDSTGLDVLQRLKDSPHTRHIPIHVVSAAD 856
            +  +      +      Q   D + +D  +P   G+++L R+K      H+   +V+A  
Sbjct: 876  FNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYG 935

Query: 857  ---NAQGAALQMGAIGYALKPTTRDELMRVF---------------ARLEDKLTQKVKVV 898
               N  G   ++      +KP     L+                  A    +     + +
Sbjct: 936  REINLDGENSKL-VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNFAGQSL 994

Query: 899  LLVEDDDLQRESVMRLIEDDDIEIVAVGSGEEALELLRTRVFDCMITDLRLPDMQGSDLL 958
            LLVED+++ +E  + L++D  + +V    G+EALE L    FD ++ D+++P M G    
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054

Query: 959  KAMAAEEIVSFPPVIVYTGRNLTRDEETELQ 989
            + + A       P++  T   +  D E  LQ
Sbjct: 1055 EHIRANPRWHSLPIVAMTANAMAIDIERCLQ 1085



 Score =  137 bits (346), Expect = 4e-36
 Identities = 88/270 (32%), Positives = 143/270 (52%), Gaps = 23/270 (8%)

Query: 896  KVVLLVEDDDLQRESVMRLIEDDDIEIVAVGSGEEALELLRTRVFDCMITDLRLPDMQGS 955
            K VL+V+D+D  R  +  L+      +V V +G EAL  ++ + FD +  D  +P M G 
Sbjct: 852  KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 956  DLLKAMAAEEIVSFPPVIVYT--GRNLTRDEETELQRYSRSIIIKGARSPERLLDEVTLF 1013
            +LL  +    +       + T  GR +  D E    +   ++I+K   +P  LLD +   
Sbjct: 912  ELLTRVKTLGLRGHMKSFLVTAYGREINLDGENS--KLVDALIVKPV-NPSNLLDAIVTS 968

Query: 1014 L------HKVEAELSSERQGMLKTARGRDRIFEGRTILLVDDDVRNIFALTSALEQRGAA 1067
                   HK      + R             F G+++LLV+D+  N       L+  G  
Sbjct: 969  YGIEHVRHKTNEAHHNSRPN-----------FAGQSLLLVEDNEVNQEVALGLLQDTGLN 1017

Query: 1068 VEIGRNGREALEKLDQVREIDLVLMDVMMPEMDGLEATRRMRADPRFEKMPVIAITAKAM 1127
            V +  +G+EALE+L+   + DLVLMD+ MP MDG+ AT  +RA+PR+  +P++A+TA AM
Sbjct: 1018 VVVANHGQEALERLEHA-DFDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAM 1076

Query: 1128 KDDREQCLAAGANDYLAKPVDLERLFSLLR 1157
              D E+CL AG ND+L+KP+++++ + +LR
Sbjct: 1077 AIDIERCLQAGMNDHLSKPIEVDKFYQVLR 1106



 Score = 41.6 bits (96), Expect = 4e-07
 Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 9/136 (6%)

Query: 762  ADDRSLPRDQVRRVLVIEDEPQFAHILYDLAHELGYRCLVAHGAADGFELATQFVPDAIL 821
            A   S P    + +L++ED      +   L  + G   +VA+   +  E       D +L
Sbjct: 981  AHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVL 1040

Query: 822  LDMRLPDSTGLDVLQRLKDSPHTRHIPIHVVSAADNAQG----AALQMGAIGYALKPTTR 877
            +DM++P   G+   + ++ +P    +PI  ++A  NA        LQ G   +  KP   
Sbjct: 1041 MDMQMPVMDGITATEHIRANPRWHSLPIVAMTA--NAMAIDIERCLQAGMNDHLSKPIEV 1098

Query: 878  D---ELMRVFARLEDK 890
            D   +++R F ++ D+
Sbjct: 1099 DKFYQVLRHFLQVSDE 1114