Pairwise Alignments

Query, 1457 a.a., Uncharacterized ATP-dependent DNA helicase PA3272 from Variovorax sp. SCN45

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score = 78.6 bits (192), Expect = 1e-18
 Identities = 100/381 (26%), Positives = 164/381 (43%), Gaps = 74/381 (19%)

Query: 18  FPSPTSAQAEAWPAIRAGRDTLVAAPTGSGKTLTAFLAALDELVRRGLEPGGLPDETAVV 77
           + +P+  Q +A PA+ AG+D + AA TG+GKT   F   + EL+ +G  P    ++   +
Sbjct: 21  YNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKT-AGFTLPILELLAKG--PKVRANQVRAL 77

Query: 78  YVSPLKALSNDIRLNLDAPLAGIRAELAALGLPDVDIRTAVRTGDTPQRERQQSLRRPPH 137
            ++P + L+  I+ N+          L    LP   +++AV  G      + Q + +   
Sbjct: 78  ILTPTRELAAQIQDNV---------MLYGRHLP---LKSAVVFGGVKINPQMQRMCKGAD 125

Query: 138 VLVTTP--------------ESLYVLLGSTSGRRM-LGTVRSVIVDEIHAVAASKRGSHL 182
           +LV TP              + L +L+   + R + +G +R +   +I  +   KR + L
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDI--HKILKLLPEKRQNLL 183

Query: 183 ALSLERLQARCLAHSGVR-PVRIGLSATQKPIDEVARFLVGAGALRADGTADCAVVDIGY 241
             +    + R LA   V  PV I +S    P +  AR            T +  +     
Sbjct: 184 FSATFSTEIRELAKGLVNNPVEISVS----PANSTAR------------TVEQCIYPADV 227

Query: 242 AKQRDLALELPPTPLEAVMSGGQWTQVYARVAELVWLHKTTLVFVNTRRMAERTARHLGD 301
            K+ D+ ++L        +  G W QV              LVF+ T+  A R A +L +
Sbjct: 228 KKKPDMLVKL--------VKEGNWQQV--------------LVFMRTKHGANRLATYLNE 265

Query: 302 ILGKEAVAAHHGSLSKETRLDAEQRLKRGALKVLVATASLELGLDIGDVDMVCQIGSPRA 361
             G  A AA HG+ S+  R  A    K G +++LVAT     G+DI  +  V     P+ 
Sbjct: 266 -QGLTA-AAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKI 323

Query: 362 IATFLQRAGRSGHAVGGVPKA 382
              ++ R GR+G A G V KA
Sbjct: 324 AEDYVHRIGRTGRA-GEVGKA 343