Pairwise Alignments

Query, 1457 a.a., Uncharacterized ATP-dependent DNA helicase PA3272 from Variovorax sp. SCN45

Subject, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

 Score =  364 bits (934), Expect = e-104
 Identities = 266/827 (32%), Positives = 420/827 (50%), Gaps = 39/827 (4%)

Query: 22  TSAQAEAWPAIRAGRDTLVAAPTGSGKTLTAFLAALDELVRRGLEPGGLPDETAVVYVSP 81
           T  Q  A P I  GR+TL+ +PTGSGKTL++F+A ++EL R   E G L +    +Y+SP
Sbjct: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEG-LQNSIYCLYISP 74

Query: 82  LKALSNDIRLNLDAPLAGIRAELAALGLPDVDIRTAVRTGDTPQRERQQSLRRPPHVLVT 141
           LK+L+NDI +NLD PL  I+  L   G     IR A+R GDT   E+ + L++ PH+L T
Sbjct: 75  LKSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNT 134

Query: 142 TPESLYVLLGSTSGRRMLGTVRSVIVDEIHAVAASKRGSHLALSLERLQARCLAHSGVRP 201
           TPE+L ++L S   +  L TV+ VI+DEIHA+A +KRG HL++SLERL+      +    
Sbjct: 135 TPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLREL----TNQEF 190

Query: 202 VRIGLSATQKPIDEVARFLVGAGALRADG-TADCAVVDIGYAKQRDLALELPPTPLEAVM 260
           +RIG SAT +P++ VA +L   G    DG      +VD  + +  DL L  P   L    
Sbjct: 191 LRIGCSATVEPLEMVADYL---GGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKT 247

Query: 261 SGGQWTQVYARVAELVWLHKTTLVFVNTRRMAERTARHLG----DILGKEAVAAHHGSLS 316
                 ++Y ++  L+  H+ TL+F NTR  AER   +L     +   +     HHGSLS
Sbjct: 248 PKEISEKLYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLS 307

Query: 317 KETRLDAEQRLKRGALKVLVATASLELGLDIGDVDMVCQIGSPRAIATFLQRAGRSGHAV 376
           KE RL+ E++LK G LK    ++SLELG+D+  +D+V QIGSP+++ T LQR GR+GH +
Sbjct: 308 KEKRLELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGI 367

Query: 377 GGVPKARLFPQSRDELVECAALLDCIRRGELDALRILPAPLDVLAQQIVAETACREWNEE 436
           G V K R+    RDEL+ECA +L     G +D + I   PLDVL Q I           E
Sbjct: 368 GKVAKGRIIALDRDELLECAVMLKKAMDGFIDKVHIPKGPLDVLIQHIYGIAINGYIELE 427

Query: 437 ELFTLVRRAWPYAQLTRKSYMDVVRMVSEGFATPQGQRA-GHVHRDAVNHLL-RERKGAR 494
            +  +VRR++ Y  +T + +  ++  ++  +A    +R    +  D    ++ +  K AR
Sbjct: 428 RVKNIVRRSYNYHDITDEDFKILINYMTASYAGMDEKRIYSKIWYDPDTQMIGKTGKTAR 487

Query: 495 MTALTSGGTIPETGDYTVVLEPQADKIGTVNEDFAIESLAGDVFQLGNTSYRILKIEPGR 554
                + GTIP+     V L      IG ++E +      GDVF LG    +       +
Sbjct: 488 AIYYMNIGTIPDDFSCDVYLRGTTIWIGKLDEQYLDRLEKGDVFTLGGEHLKFQYRRGSK 547

Query: 555 VRVEDAHGVAPNIPFWLGEAPGRSDELSHGVSRLRAEVAQALEAGGRDAAMRLLTQTFGL 614
           V V D     PNIP W  E    S +L   +   + E      AG     + LL++ + L
Sbjct: 548 VYV-DKTSERPNIPSWYSERLPLSYDLGRNILLFKKEAVSKYNAG---RLLDLLSE-YPL 602

Query: 615 DEEAARQIVEHLAHAHAVLG--TLPTQRTLILE-RFFDASGGMQLVIHSPFGSRLNRAWG 671
           D  A + +           G  ++ T   +++E   FD    M    HS +G + N  + 
Sbjct: 603 DSNATKSLYGLFNEQILYKGNDSVSTLNKMVVEGHIFDKK--MHYYFHSNYGRKFNDGFS 660

Query: 672 LALRKRFCRTFNFELQAAATEDAIVLSLSTSHSFPLDEVARYLHSSSALHVLVQALLDAP 731
            A+     + +   +  + ++    L  + +    ++   R L   +   VL QAL    
Sbjct: 661 RAVAYALSKQYKLGVLVSISDTGFSLEFAKNQKVDIESAIRSLTPENIKDVLKQALEGTN 720

Query: 732 LFNVRWRWNATTALALPRFSGGRKVAPQLQRMRSEDLLAAVFPDQVACAENIVGERDVPE 791
           L    +R NAT +L + R   G K + + Q++ S D+L       ++ A+++  +R  P 
Sbjct: 721 LLKRMFRINATRSLMILRNYIGHKKSAKKQQV-SADIL-------ISYAKSL--DRFAP- 769

Query: 792 HPLVAQTLDDCLHDAMDADGWLSLLRRMESGEVRVIARDLPAPSPLA 838
              + +TL + + D+++ D    +L  + SG++++   D+P P+P++
Sbjct: 770 ---LEETLREIIEDSLELDNIREVLGEIRSGKLKINVIDVPIPTPMS 813