Pairwise Alignments

Query, 1457 a.a., Uncharacterized ATP-dependent DNA helicase PA3272 from Variovorax sp. SCN45

Subject, 759 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  110 bits (275), Expect = 5e-28
 Identities = 102/357 (28%), Positives = 166/357 (46%), Gaps = 37/357 (10%)

Query: 25  QAEAWPAIRAGRDTLVAAPTGSGKTLTAFLAALDELVRRGLEPGGLPDETAVVYVSPLKA 84
           Q  A   +R G++ L+   T SGKTL+  L  L+ L           D TA+ Y+ P KA
Sbjct: 65  QYSALENVRIGKNILLTTSTASGKTLSFNLPILETLQND-------KDATAL-YIYPTKA 116

Query: 85  LSNDIRLNLDAPLAGIRAELAALGLPDVDIRTAVRTGDTPQRERQQSLRRPPHVLVTTPE 144
           L+ND   NL      +  EL      ++ ++  +  GDTP  +R+ S+R    +++T P 
Sbjct: 117 LTNDQLNNLK----NLENEL------NITLKPEIYDGDTPNSKRK-SIREKSRIILTNPH 165

Query: 145 SLY-VLLGSTSGRRMLGTVRSVIVDEIHAVAASKRGSHLALSLERLQARCLAHSGVRPVR 203
            L+ VL  +         ++ +++DE H       GS+++  + RL+  C  + G  P  
Sbjct: 166 ELHQVLQYNPKWMSFFKNLKYIVIDEAHTYRGIF-GSNISFLIRRLRRICEDY-GSYPQF 223

Query: 204 IGLSATQKPIDEVARFLVGAGALRADGTADCAVVDIGYAKQRDLALELPPTPLEAVMSGG 263
           I  SAT     E +  LVG          D  V+D   + +         T L+  +S  
Sbjct: 224 ILASATLANAKEFSEKLVGL---------DFRVIDKDGSPKNKKYFVFYNT-LKNEISES 273

Query: 264 QWTQVYARVAELVWLHKT-TLVFVNTRRMAER----TARHLGDILGKEAVAAHHGSLSKE 318
            W      + EL   +   T+ F  +R+MAE     T + LG+ +    ++++    + E
Sbjct: 274 SWYSSAINILELCMKYGLQTIGFTLSRKMAELITIWTKKSLGNNILSRKISSYRSGFTPE 333

Query: 319 TRLDAEQRLKRGALKVLVATASLELGLDIGDVDMVCQIGSPRAIATFLQRAGRSGHA 375
            R D E RLK G L+ + +T +LE+G+DIG +D V   G P  + +  Q+AGR+G A
Sbjct: 334 ERRDIESRLKNGDLRAVTSTNALEVGIDIGSLDSVIMYGYPGTLMSLWQQAGRAGRA 390