Pairwise Alignments

Query, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 312 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  232 bits (591), Expect = 1e-65
 Identities = 128/310 (41%), Positives = 192/310 (61%), Gaps = 3/310 (0%)

Query: 2   FRFAASRIAMAIPTLLIVAVSVFVLIRLIPGDPAQLLLGDLATPASLAELRARLGLDRSV 61
           +RF  +R    +P +  +++  F+L+RLIPGDPA+ LLG  ATP+++A++RA+ GLD  +
Sbjct: 4   YRFVLTRPLQFLPVIFGISIITFILVRLIPGDPARNLLGARATPSAIAKIRAQYGLDEPM 63

Query: 62  PAQFGIWFGHVLQGDLGTSINSGQDVLSLVTERFLISGRIVLVAVALAAMVAVPAGMIAA 121
             Q+  +  ++  G++G SI    DVL L+  R   +  +VL +V LA ++AVP   +AA
Sbjct: 64  WQQYFYFLKNLADGEMGKSILYKIDVLKLIATRVEPTIALVLSSVVLAVLIAVPMAALAA 123

Query: 122 WKQNRAPDLLLVGAATLLVSIPTFWLGLLLLLLFGLKLGWLPVVGYVGISEDWKNGLLYL 181
               +APD ++   +T  +  P FWLGL+L++LF +KL  LPV GY      + + L +L
Sbjct: 124 RNSGKAPDHIVRVVSTFGIGFPPFWLGLMLMILFSVKLDVLPVSGY---GATFGDKLAHL 180

Query: 182 LLPVLTLFLHEIGVLMRMARASTLEVLRLDYITHARAKGLSERAVLMRHAFKNAFGPTWT 241
           +LP LT+ L    VL+R  RA+ +E L+ D  T ARA+G+ ER V  RH   N+  PT  
Sbjct: 181 ILPSLTVALSLSTVLVRSLRAAMIESLKSDVATAARARGMPERIVFWRHVVPNSLVPTIN 240

Query: 242 LIGLVLGNLLGGIAVVETVFTIPGLGRLLVDAIFARDYPVIQGCLLFVAVIYVAVNLVID 301
           L+ + +G L+GG  VVE+VF +PG+G+LLV AIF+RDY V+QG  +  A   V VN + D
Sbjct: 241 LLAVNIGWLIGGTVVVESVFALPGMGQLLVRAIFSRDYMVVQGVAMVFACATVLVNFIAD 300

Query: 302 LCYPFFDPRV 311
           +     DPRV
Sbjct: 301 IVTVAVDPRV 310