Pairwise Alignments

Query, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 328 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  213 bits (542), Expect = 5e-60
 Identities = 125/313 (39%), Positives = 182/313 (58%), Gaps = 12/313 (3%)

Query: 9   IAMAIPTLLIVAVSVFVLIRLIPGDPAQLLLGDL--ATPASLAELRARLGLDRSVPAQFG 66
           +  A+PT+L + +  F L++L PGD A +L G+   AT  S+A LRAR GLD  V  Q  
Sbjct: 15  LLQAVPTILGIVILNFFLLQLAPGDAADVLAGEAGSATEESVAALRARFGLDSPVLEQLA 74

Query: 67  IWFGHVLQGDLGTSINSGQDVLSLVTERFLISGRIVLVAVAL--AAMVAVPAGMIAAWKQ 124
            + G++ Q  LG S   G  V  L+ +R  + G + L+AVAL  A ++ V  G + A   
Sbjct: 75  TYLGNLAQFSLGFSPRYGMPVADLIAQR--LPGTLTLMAVALFIAILLGVVLGSLMASFA 132

Query: 125 NRAPDLLLVGAATLLVSIPTFWLGLLLLLLFGLKLGWLPVVGYVGISEDWKN--GLL--- 179
            R PD LL   + L  SIP+FW+GL+L++LF +KLGWLP  G   I    K    LL   
Sbjct: 133 GRIPDRLLSIFSLLFYSIPSFWIGLMLIVLFSVKLGWLPSGGAATIGSQLKGFPALLDKA 192

Query: 180 -YLLLPVLTLFLHEIGVLMRMARASTLEVLRLDYITHARAKGLSERAVLMRHAFKNAFGP 238
            Y++LP  +L L  + +  R+ RA+ LEV   D++  A AKGL+   V  RH  +NA  P
Sbjct: 193 RYMVLPATSLALFYVAIYARLTRAAMLEVKNHDFVRTAYAKGLTPFGVTARHILRNALIP 252

Query: 239 TWTLIGLVLGNLLGGIAVVETVFTIPGLGRLLVDAIFARDYPVIQGCLLFVAVIYVAVNL 298
             T+ G+ +G +LGG  VVETV++ PGLGRL  +A+  RD+ V+ G LL  +++ +  N 
Sbjct: 253 ITTMAGMHIGGMLGGAVVVETVYSWPGLGRLAFEAVMGRDFTVLLGILLLSSLLVIIANA 312

Query: 299 VIDLCYPFFDPRV 311
            +DL + + DPR+
Sbjct: 313 AVDLVHAWLDPRI 325