Pairwise Alignments

Query, 333 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 330 a.a., substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  121 bits (304), Expect = 2e-32
 Identities = 90/291 (30%), Positives = 138/291 (47%), Gaps = 6/291 (2%)

Query: 9   VAGLCIGLVAPTWAQQERVIRFGHLNNADHPVSFGVKRFAELLAAKSGGKMKVQEYPASQ 68
           VAG  +G      A     +R+ H+       +    + AE +AA +GG++ V  YPASQ
Sbjct: 10  VAGAMLGAALLAGAASATELRYAHVGAEGDIQTVYAAQAAEGIAAATGGEVTVTVYPASQ 69

Query: 69  LGNEMQQQSALQGGVQQMSAPATTSLAGIVKEFGLVDFPFSVNNFAQADALLD---GPLG 125
           LG   +    ++ G   M      SLA +V E  + + PF   + A A A  D    P  
Sbjct: 70  LGGVAEMVDGVRMGSISMGHHDFASLARLVPEVAVFNAPFIYRDGAHALAATDPQSSPAL 129

Query: 126 QALIAKLPEKGLVALGYWDLGFRNVTNSKRPIAKPEDLEGLKIRVIPNPVFLETFKSFKA 185
           QA+  KL  +G+  +G    G R+++ S  P+  P DL G   R +P  +++   K F A
Sbjct: 130 QAINEKLIAQGVRIVGRIYRGDRHIS-SNFPVKTPADLAGKPFRAVPLELWVSMVKGFGA 188

Query: 186 NPVPMPFAELYGALESKAVDGQENPYSVILSNKFFEVQKFVSATNHVYAANIVLVSKKFW 245
            P P+  AEL  AL +  V GQENP + I SN   EVQ  +S T H+ A   V ++++ W
Sbjct: 189 IPTPVEVAELPTALMTGVVVGQENPLTRIASNNLNEVQSHLSMTGHMRAVLAVFINEEVW 248

Query: 246 DSLSAAEQKMMNEAADEARGYQRQVSRAAAQKAIGDLQAKGAQFNEVSAAE 296
             LS  ++  + +  DE    Q+ +  A   +A    + KG     ++ AE
Sbjct: 249 QGLSEEQRTALTKVLDEEA--QKSLKMATESEADLVKELKGRGMTVITEAE 297