Pairwise Alignments

Query, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

Subject, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  284 bits (726), Expect = 4e-81
 Identities = 160/427 (37%), Positives = 254/427 (59%), Gaps = 23/427 (5%)

Query: 14  MAMGIPIAFSL-LACGVALMWHLDLFDAQILAQNVIGGADSFPLLAVPFFMLAGEIMNVG 72
           M +G+PIA SL L+  + L+WH D   A +        A  + LLA+PFF+LA   M+ G
Sbjct: 14  MIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAIPFFILASTFMSTG 73

Query: 73  GLSKRIVDLALALVGHVKGGLGYVTIMAGCLLSALSGSAVADAAALTALLLPMMVKAGHD 132
           G++KRI+  A+A+VG  +GGL   +++A  + +ALSGS+ A   A+ ++++  MVK G+ 
Sbjct: 74  GVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIGSIVIAGMVKNGYS 133

Query: 133 KARAGGLIAATGIIGPVIPPSIGLVIFGVAANVSISKLFMAAIVPGLLIGGALWVTWAWL 192
           K  A G+I   G +G +IPPSI +V++  A NVS+ ++F+  +VPGLL G  L +     
Sbjct: 134 KEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGLLAGLMLIIAIYIT 193

Query: 193 VRHEKIQPPPRKPAREVMKAARDAGWALLLPVIILVGLRMGVFTPTEAAVVAAVYAFFVA 252
            R + +   P    +E +KAA++A W LLL VIIL G+  G+FTPTEAA VAAVY+FF+A
Sbjct: 194 ARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTEAAAVAAVYSFFIA 253

Query: 253 TFIYREL--------SFDALYKV------------FVSAAKTSAVVMFLIAAAMVSAWLI 292
            FIYR++        +   L KV               A K + ++MF+IA A++   ++
Sbjct: 254 NFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLMFIIANALILKHVL 313

Query: 293 TVADLPSKVV-GLLEPFMGNKILLMIMVMLLVMAVGTAMDMTPTILILTPVLMPVVIAAG 351
           T   +P  +   +L   +G  I  +I+V L+++  G  M+ +  ++I+ P++ P+ IA G
Sbjct: 314 TEERIPQMITESMLSAGLG-PITFLIVVNLILLVGGQFMEPSGLLVIVAPLVFPIAIALG 372

Query: 352 IDPVYFGVMFIINNSIGLITPPVGVVLNVVAGVGKMKMDDVTRGVLPFMAAEFAIMFVMV 411
           IDP++ G+M ++N  IG+ITPPVG+ L V +GV KM M +V +  LP++   F  + ++ 
Sbjct: 373 IDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPWVGVMFLFLIIVT 432

Query: 412 IFPQLVT 418
             P + T
Sbjct: 433 YVPWVST 439