Pairwise Alignments

Query, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

Subject, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  313 bits (802), Expect = 6e-90
 Identities = 168/423 (39%), Positives = 254/423 (60%), Gaps = 3/423 (0%)

Query: 7   VGSL---LVAMAMGIPIAFSLLACGVALMWHLDLFDAQILAQNVIGGADSFPLLAVPFFM 63
           VGS+   L  +  G+P+ FSL+   +A +   +       AQ ++GG D+F LLAVPFF+
Sbjct: 2   VGSIFGWLGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFV 61

Query: 64  LAGEIMNVGGLSKRIVDLALALVGHVKGGLGYVTIMAGCLLSALSGSAVADAAALTALLL 123
           L G +MN  G+++RI + A +LVGH+ G LG+V IMA  L S +SGSA+ADA  L  L +
Sbjct: 62  LTGHLMNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEI 121

Query: 124 PMMVKAGHDKARAGGLIAATGIIGPVIPPSIGLVIFGVAANVSISKLFMAAIVPGLLIGG 183
             M  A +    AGGL AA+ IIGP++PPS+ LVI+GV +N SI  LF+A  +PGLL   
Sbjct: 122 KSMRDAKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCI 181

Query: 184 ALWVTWAWLVRHEKIQPPPRKPAREVMKAARDAGWALLLPVIILVGLRMGVFTPTEAAVV 243
           AL V   ++ +       P+   RE  K+ ++A  +LL PVII+ G+  G FTPTEAA V
Sbjct: 182 ALMVMSYFICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAV 241

Query: 244 AAVYAFFVATFIYRELSFDALYKVFVSAAKTSAVVMFLIAAAMVSAWLITVADLPSKVVG 303
           +++YA F+ T +Y  L+     ++      T+AVV  ++    V  W++    LP  +  
Sbjct: 242 SSLYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLAD 301

Query: 304 LLEPFMGNKILLMIMVMLLVMAVGTAMDMTPTILILTPVLMPVVIAAGIDPVYFGVMFII 363
                  N ++L++++ LL++ +GT ++    +L+L P L+PV  A GIDPV+FGVM I+
Sbjct: 302 YFLTISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAIL 361

Query: 364 NNSIGLITPPVGVVLNVVAGVGKMKMDDVTRGVLPFMAAEFAIMFVMVIFPQLVTVPARW 423
           N  IG++TPP+G+ L VV+ VG +    +TRGVLP +   F ++ ++ +FPQ   +    
Sbjct: 362 NLMIGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPEL 421

Query: 424 FGG 426
           F G
Sbjct: 422 FLG 424