Pairwise Alignments

Query, 299 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  259 bits (663), Expect = 4e-74
 Identities = 132/290 (45%), Positives = 187/290 (64%), Gaps = 11/290 (3%)

Query: 20  FLHSRIAIGGLVVLGIVVLAALLAPWITPQNPYDLLQLDVLDARLPPGSHSSEGGYTYWL 79
           FL  ++A+    V  + V+ A+ AP I P NPYDL  +D++DA LPP S    G   + L
Sbjct: 23  FLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPP-SWMEGGNEHFLL 81

Query: 80  GTDGQGRDLYSAIVYGLRISLTVGVGSALIAAVVGTLVGLIAAYAGGKVDALLMRLVDLL 139
           GTD QGRD++S I+YG R+SLT+G  +  +   +G ++GL A Y GG++D+ LMR  D+ 
Sbjct: 82  GTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQ 141

Query: 140 LSFPTILMALMILAYVGKGVGN--------VMLTLVL--LEWAYYARTARGQALVEARRE 189
           LSF T+++A+++ A      G         VML +++   EW  YART R   L E ++E
Sbjct: 142 LSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKE 201

Query: 190 YVDAAQGQGIPRWRIVTGHILPNCLPPLLVIGALQIARAITLEATLSFLGLGVPITEPSL 249
           YV+AA+  G    RI+  HILPNCL P+LVI  +Q+A AI  EA LSFLGLG+P+ +PSL
Sbjct: 202 YVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSL 261

Query: 250 GLLISNGYQYLLSNEYWISFFPGVALLAAIVAINLVGDQLRDVLNPRLQK 299
           G LIS G+ Y+ S  +WI+ FPG+ L+  ++ INL+GD LRDV NP++ K
Sbjct: 262 GSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKIYK 311