Pairwise Alignments

Query, 688 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  255 bits (651), Expect = 5e-72
 Identities = 123/260 (47%), Positives = 181/260 (69%)

Query: 14  LEVRNLQTRFHTRAGVLPVVDGVSFTLGRGKVLGLVGESGSGKSVTGFSIMGLVDPPGKV 73
           LEV+NL+  + +R GV   V  ++  + RG+++G+VGESG+GKS  G +++ L+ PPG +
Sbjct: 4   LEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGTI 63

Query: 74  EGGQVLFQGRELTQLPAIERRELRGNRIAMIFQDPMATLNPVLRVDTQMIEAVKAHKRVS 133
            GG+V   G +++ L     RE+RG++I  IFQDPM +LNP+  V+ Q+ E + A+ +VS
Sbjct: 64  AGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQVS 123

Query: 134 TEEARRHARDTLGLMGIPSPEERLRAYPHQLSGGMRQRVAIAIAMLHGPDLIIADEPTTA 193
            EEA + A   +  +GIP PE RL+ YPHQ SGGMRQRV IAIA+   PDLIIADEPTTA
Sbjct: 124 AEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTA 183

Query: 194 LDVTIQAQILSEVQKLVRETGTSLIWISHDLSVVASLADEIAVMYAGRIVEHGTVADVLD 253
           LDV+IQ QIL+ +++L ++     + ++HD+ VV+++ D +AVMY G +VE G  A VL 
Sbjct: 184 LDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLG 243

Query: 254 HPQHPYTRGLIDSLPSANER 273
            P+HPYTR LI ++P ++ +
Sbjct: 244 TPEHPYTRSLISAVPRSDRK 263



 Score =  215 bits (547), Expect = 5e-60
 Identities = 112/228 (49%), Positives = 149/228 (65%), Gaps = 2/228 (0%)

Query: 400 VDLSVRPGEVVGLVGESGCGKSTLGRIAAGLLTPTEGEVIVGGKPVASLSAQ-EQLAARL 458
           V  +V  GE  GLVGESG GKST+ R+ AGL  P  G V   G  + +L ++ E+   R 
Sbjct: 332 VSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRR 391

Query: 459 RIQMVFQDPYASLNPRLRVSRIVGEAAMLHGLTDAAGQDDYVCAQL-ERAGLDPALRHRY 517
           ++QMVFQ+PY S+NPR+++  I+ E    H LT +  +   +   L E  GL      +Y
Sbjct: 392 QMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKY 451

Query: 518 PHQFSGGQRQRIGIARALAVQPSMLVCDEAVAALDVSIQAQILNLFMDLRDQLGLAYLFI 577
           PH+FSGGQRQRI IARALA +P +L+CDE  +ALDVS+QAQILNL  DL+D+L L  LFI
Sbjct: 452 PHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFI 511

Query: 578 SHDLGVIEHLCDRVVVMYLGRVVESAPVADLFARPAHPYTQALLAEIP 625
           SHDL VI  +CDRV VM +G ++E AP   LF  P H Y++ L++ +P
Sbjct: 512 SHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMP 559



 Score =  174 bits (442), Expect = 8e-48
 Identities = 100/251 (39%), Positives = 148/251 (58%), Gaps = 11/251 (4%)

Query: 396 AVDVVDLSVRPGEVVGLVGESGCGKSTLGRIAAGLLTP----TEGEVIVGGKPVASLSAQ 451
           AV  + L ++ GE+VG+VGESG GKST+G     LL+P      GEV + G+ ++ LS Q
Sbjct: 22  AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGTIAGGEVYLNGEKISGLSPQ 81

Query: 452 EQLAAR-LRIQMVFQDPYASLNPRLRVSRIVGEAAMLHGLTDAAGQDDY--VCAQLERAG 508
                R  +I  +FQDP  SLNP   V   + E   +H     + ++ Y    + +++ G
Sbjct: 82  AMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET--IHANMQVSAEEAYQRALSLMKQVG 139

Query: 509 L-DPALR-HRYPHQFSGGQRQRIGIARALAVQPSMLVCDEAVAALDVSIQAQILNLFMDL 566
           +  P  R  +YPHQFSGG RQR+ IA ALA +P +++ DE   ALDVSIQ QILNL  +L
Sbjct: 140 IPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLIREL 199

Query: 567 RDQLGLAYLFISHDLGVIEHLCDRVVVMYLGRVVESAPVADLFARPAHPYTQALLAEIPS 626
             +  +  + ++HD+GV+ ++ DRV VMY G +VE  P A +   P HPYT++L++ +P 
Sbjct: 200 CKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLGTPEHPYTRSLISAVPR 259

Query: 627 IDARGTTFSAI 637
            D +   F  +
Sbjct: 260 SDRKLDRFPLV 270



 Score =  167 bits (422), Expect = 2e-45
 Identities = 101/266 (37%), Positives = 153/266 (57%), Gaps = 16/266 (6%)

Query: 12  PTLEVRNLQTRFHTRAGV-------LPVVDGVSFTLGRGKVLGLVGESGSGKSVTGFSIM 64
           P L+V N+  RF T+  +       +   + VSF +  G+  GLVGESGSGKS     I 
Sbjct: 301 PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360

Query: 65  GLVDPPGKVEGGQVLFQGRELTQLPAI-ERRELRGNRIAMIFQDPMATLNPVLRVDTQMI 123
           GL  P      G+V F+G +LT L +  ERR LR  ++ M+FQ+P  ++NP +++   + 
Sbjct: 361 GLYQP----NAGRVTFEGIDLTALKSEHERRPLR-RQMQMVFQNPYTSMNPRMKIFDIIA 415

Query: 124 EAVKAHKRVSTE-EARRHARDTLGLMGIPSPEERLRAYPHQLSGGMRQRVAIAIAMLHGP 182
           E ++ HK   +E E R+   D L  +G+         YPH+ SGG RQR++IA A+   P
Sbjct: 416 EPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIARALATRP 473

Query: 183 DLIIADEPTTALDVTIQAQILSEVQKLVRETGTSLIWISHDLSVVASLADEIAVMYAGRI 242
            L+I DEPT+ALDV++QAQIL+ ++ L  E   ++++ISHDL V+  + D + VM  G +
Sbjct: 474 RLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTL 533

Query: 243 VEHGTVADVLDHPQHPYTRGLIDSLP 268
           +E      +   PQH Y++ LI  +P
Sbjct: 534 LEVAPTEQLFTDPQHEYSKKLISLMP 559