Pairwise Alignments

Query, 688 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 557 a.a., oligopeptidemurein peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  371 bits (952), Expect = e-107
 Identities = 219/621 (35%), Positives = 324/621 (52%), Gaps = 72/621 (11%)

Query: 6   VQDLEVPTLEVRNLQTRFHTRAGVLPVVDGVSFTLGRGKVLGLVGESGSGKSVTGFSIMG 65
           V+ +  P L V NL  R  + +   P++  VSF LGRG++LG++GESG+GKS  G +I+G
Sbjct: 3   VEHVTTPLLRVENLGLRHVSGSATTPILSDVSFELGRGEILGIIGESGAGKSTVGNAILG 62

Query: 66  LVDPPGKVEGGQVLFQGRELTQLPAIERRELRGNRIAMIFQDPMATLNPVLRVDTQMIEA 125
           L+ P  +   G + F G+ +  + A ER  LRG RI+ IFQD  A+L+P++ V  Q+ E 
Sbjct: 63  LLSPEFQQTSGTIEFDGKAIDGMTADERETLRGRRISAIFQDHTASLDPLMSVGAQVEET 122

Query: 126 VKA-HKRVSTEEARRHARDTLGLMGIPSPEERLRAYPHQLSGGMRQRVAIAIAMLHGPDL 184
             A    +S  EAR  A D L  +GIP PE R R YPHQ SGG RQRV IAIA+   PD+
Sbjct: 123 CLALDSSLSRREARARAIDLLARVGIPEPERRYRNYPHQFSGGQRQRVVIAIALAGSPDI 182

Query: 185 IIADEPTTALDVTIQAQILSEVQKLVRETGTSLIWISHDLSVVASLADEIAVMYAGRIVE 244
           IIADEPT+ALD T+Q Q+L  ++ LV ETG S+I ++HD+ V++ + + + VM  G++VE
Sbjct: 183 IIADEPTSALDATVQKQVLELLKILVDETGVSIILVTHDMGVISEITNRVLVMRKGQVVE 242

Query: 245 HGTVADVLDHPQHPYTRGLIDSLPSANERGARLRQIQGMTPSLLKMPAGCAFAPRCPHAD 304
                 +LD P+H YT                 +++    P L           R P   
Sbjct: 243 ADRTTAILDQPRHDYT-----------------KKLLAAVPRL-----------RIPTRT 274

Query: 305 AACEQQRPEVSRPRHDAPWHEVRCFHPQRDKPVPAVPAAPPAAARVAAQEQDVPLIELRQ 364
           A  E    +   P  D+  +                                 PL+    
Sbjct: 275 AKAEDNGRQADSPAIDSDQN---------------------------------PLLIAEG 301

Query: 365 VAQRFGATLPPGAVGRALRSVGLSKPPVVTHAVDVVDLSVRPGEVVGLVGESGCGKSTLG 424
           ++++F        +GR     GL            V + +  G + G+VGESG GK+T G
Sbjct: 302 LSKQFAPQGFAWGIGRGKPRFGLRD----------VGIRLARGSITGIVGESGSGKTTFG 351

Query: 425 RIAAGLLTPTEGEVIVGGKPVASLSAQEQLAARLRIQMVFQDPYASLNPRLRVSRIVGEA 484
           RI AGL T   G + +G  P     +  +     R+QM+FQDP  SLNPR+ +   + E+
Sbjct: 352 RILAGLDTAPTGRITIGEHPFDVSQSGRRSGLLGRVQMIFQDPSVSLNPRMTIGETLDES 411

Query: 485 AMLHGLTDAAGQDDYVCAQLERAGLDPALRHRYPHQFSGGQRQRIGIARALAVQPSMLVC 544
                   +  +   + A ++R GL  +L  R+PHQ SGGQ+QR+ IARAL  +P ++V 
Sbjct: 412 IRFGARIRSGEEPADLAAMMDRLGLPRSLLGRHPHQLSGGQKQRVCIARALLARPEIIVA 471

Query: 545 DEAVAALDVSIQAQILNLFMDLRDQLGLAYLFISHDLGVIEHLCDRVVVMYLGRVVESAP 604
           DE  +ALDVS+QA+I+ L  D   +  +  +FISHDL +++ +C  V +   GR+ +  P
Sbjct: 472 DEPTSALDVSVQAEIVQLLKDTIAERAMTMVFISHDLAIVQAMCSSVYIFKDGRIEDFGP 531

Query: 605 VADLFARPAHPYTQALLAEIP 625
              +F+R  +PYT+AL+   P
Sbjct: 532 TEFIFSRSDNPYTRALINARP 552



 Score =  160 bits (404), Expect = 2e-43
 Identities = 94/236 (39%), Positives = 138/236 (58%), Gaps = 8/236 (3%)

Query: 400 VDLSVRPGEVVGLVGESGCGKSTLGRIAAGLLTP----TEGEVIVGGKPVASLSAQEQLA 455
           V   +  GE++G++GESG GKST+G    GLL+P    T G +   GK +  ++A E+  
Sbjct: 33  VSFELGRGEILGIIGESGAGKSTVGNAILGLLSPEFQQTSGTIEFDGKAIDGMTADERET 92

Query: 456 AR-LRIQMVFQDPYASLNPRLRVSRIVGEAAM-LHGLTDAAGQDDYVCAQLERAGL-DPA 512
            R  RI  +FQD  ASL+P + V   V E  + L                L R G+ +P 
Sbjct: 93  LRGRRISAIFQDHTASLDPLMSVGAQVEETCLALDSSLSRREARARAIDLLARVGIPEPE 152

Query: 513 LRHR-YPHQFSGGQRQRIGIARALAVQPSMLVCDEAVAALDVSIQAQILNLFMDLRDQLG 571
            R+R YPHQFSGGQRQR+ IA ALA  P +++ DE  +ALD ++Q Q+L L   L D+ G
Sbjct: 153 RRYRNYPHQFSGGQRQRVVIAIALAGSPDIIIADEPTSALDATVQKQVLELLKILVDETG 212

Query: 572 LAYLFISHDLGVIEHLCDRVVVMYLGRVVESAPVADLFARPAHPYTQALLAEIPSI 627
           ++ + ++HD+GVI  + +RV+VM  G+VVE+     +  +P H YT+ LLA +P +
Sbjct: 213 VSIILVTHDMGVISEITNRVLVMRKGQVVEADRTTAILDQPRHDYTKKLLAAVPRL 268