Pairwise Alignments

Query, 521 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  150 bits (378), Expect = 1e-40
 Identities = 123/499 (24%), Positives = 211/499 (42%), Gaps = 49/499 (9%)

Query: 19  ASAQTLSIGFADPVSSVDPELNNHAGDRSLALHFWDSIINSRDGGKLEPALASSWKALDD 78
           A  Q L  G    V+S+DP       + ++     + ++N    G + P +A SW+  D+
Sbjct: 37  APVQELVRGNGTEVASLDPHKTEGVPESNVIRDLLEGLVNQDANGNVVPGVAESWETTDN 96

Query: 79  KTWEFKLRTDIKWQDGTPFSADDIVFSFQRSRNVPGSVASYSGALRTVESVTAK------ 132
           KT+ F +R D KW +G P +A D V+SFQR+ + P + + YS  +   +   AK      
Sbjct: 97  KTFTFHIRKDAKWSNGDPVTAHDFVYSFQRAVD-PATASPYSWYMEYTKMKNAKEIIAGE 155

Query: 133 -----------DPATLIVKTNTPNPMLPLEIASIYIVSKHVGEKSKTED-YNAGRAVVGT 180
                      D  TL+ +  T  P   + +    +   H     K  D +      VG 
Sbjct: 156 KDKSTLGAKAVDDHTLVFELETAVPYFVMMMGHTTVKPIHKATVEKFGDQWTKPENFVGN 215

Query: 181 GPYKFVSYVPGDRTVFERNPGYYGPK-PLWEKVNYRFINNGAARTAALLAGDVDVIDKVA 239
           G Y    +V  +R   +RNP Y+  K  +  KV Y  I N  A     L+G++ + +++ 
Sbjct: 216 GAYVLDKWVVNERLELKRNPQYWDDKNTVLNKVTYLPIENQVAEMNRFLSGEIQITNELP 275

Query: 240 VTDVEKLRKDPKVSVYTYPGLRVLLLQPTFKAGPNEFITDNAGKPLEKNPLLDVRVRQAL 299
           +   ++L+K+   SV     L       T+  G N           +K P  DVRVR+AL
Sbjct: 276 LEHFKRLKKEHPESVQVQGQL------CTYYYGFNN----------KKPPFDDVRVRKAL 319

Query: 300 SLAINRKAIVDRVLQGTVTEANQWMPKGSFGYNPDVKDIAYNAE-----QAKKLLAEAGF 354
           S AI+R  + D +L      A    P+ + G++P++       +     +AKKLL EAG+
Sbjct: 320 SYAIDRDVVSDAILGQGQKPAYFLTPEITAGFSPEMPAYGKMTQKERIAEAKKLLEEAGY 379

Query: 355 PQGFQIAIHVPGDRYPQAPETVQAVAQFW-SRIGVKTKVEVVPWAVYSGRANKNEYAVSV 413
            +   +   +  +      +   A+   W + +GV   +E   W  Y     +  + V+ 
Sbjct: 380 NKSNPLKFTLLYNTSENHKKIATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTR 439

Query: 414 IAWGNGTGEAGYGLLQTLTTPDAKRGRGSNNWGRYSNESVDKALDAATVEFDAKRREAIF 473
             W     EA   L   L++        ++N  +Y +   D  ++ A      + R+ ++
Sbjct: 440 AGWCGDYNEASSFLTLMLSS-------NTSNDPQYHSAEYDAVIEKAKTSTSEEERQKLY 492

Query: 474 RHAAKLVTDDVGQIPLYHY 492
             A KL+  D+   P+Y Y
Sbjct: 493 ADAEKLLARDMPIAPIYQY 511