Pairwise Alignments

Query, 521 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  244 bits (623), Expect = 6e-69
 Identities = 160/518 (30%), Positives = 261/518 (50%), Gaps = 37/518 (7%)

Query: 8   VAAALLATGVS--ASAQTLSIGF-ADPVSSVDPELNNHAGDRSLALHFWDSIINSRDGGK 64
           +A AL+A G+S  A A  +++ + ADPVS +DP      G   L+   +D +I      +
Sbjct: 8   LALALIAAGLSFGAMAADITVAYDADPVS-MDPHEQLSGGTLQLSHMVFDPLIRFTQKME 66

Query: 65  LEPALASSWKALDDKTWEFKLRTDIKWQDGTPFSADDIVFSFQRSRNVPGSVASYSGALR 124
            EP LA SW+ +D++T  F LR  +K+  G  F+ADD+V++F R +      A + G   
Sbjct: 67  FEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKES----ADFKGIFE 122

Query: 125 TVESVTAKDPATLIVKTNTPNPMLP------LEIASIYIVSKHVGEKSKTEDYNAGRA-- 176
            + S+T  D  T+ +KT    P++         + S +        K+K E    G +  
Sbjct: 123 PLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHGNSFA 182

Query: 177 ---VVGTGPYKFVSYVPGDRTVFERNPGYY--GPKPLWEKVNYRFINNGAARTAALLAGD 231
              + GTGP+   +   G +  F+RNP Y+    K   +K+    I   A R AALL+G 
Sbjct: 183 SENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSGG 242

Query: 232 VDVIDKVAVTDVEKLRKDPKVSVYTYPGLRVLLLQPTFKAGPNEFITDNAGKPLEKNPLL 291
           VD+I  V+  D ++++    V ++T PG RV+  Q    + P                L 
Sbjct: 243 VDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNP---------------ALK 287

Query: 292 DVRVRQALSLAINRKAIVDRVLQGTVTEANQWMPKGSFGYNPDVKDIAYNAEQAKKLLAE 351
           DVRVRQA+  AIN + IVD+V++G  T A Q  P G  GYN ++K   ++  +AK+L+ E
Sbjct: 288 DVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKP-RFDLNKAKELMKE 346

Query: 352 AGFPQGFQIAIHVPGDRYPQAPETVQAVAQFWSRIGVKTKVEVVPWAVYSGRANKNEYAV 411
           AG+ +GF + +  P +RY    +  QA +   S+IG+K  ++ +P A Y    +K    +
Sbjct: 347 AGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADM 406

Query: 412 SVIAWGNGTGEAGYGLLQTLTTPDAKRGRGSNNWGRYSNESVDKALDAATVEFDAKRREA 471
            +I W   T ++         T D+  G+G  N G YSN  VDK ++AA  E D ++R  
Sbjct: 407 LMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRST 466

Query: 472 IFRHAAKLVTDDVGQIPLYHYQNIWAAKKGLKVVPLLS 509
           + +   +++ ++   +PL+     WAAK  L + P+++
Sbjct: 467 MLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIIN 504