Pairwise Alignments

Query, 521 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 531 a.a., oligopeptidemurein peptide ABC transporter substrate-binding protein precursor from Sinorhizobium meliloti 1021

 Score =  294 bits (752), Expect = 6e-84
 Identities = 186/506 (36%), Positives = 280/506 (55%), Gaps = 22/506 (4%)

Query: 24  LSIGFADPVSSVDPELNNHAGDRSLALHFWDSIINSRDGGKLEPALASSWKALDDKTWEF 83
           L I  +  + ++DP+  N   + SL  H ++ ++   D  +L+P LA+SW+ L D  W F
Sbjct: 35  LRIATSYKLMTLDPQYANLNENTSLLSHIYERLVYQDDNLELKPGLATSWRPLSDTQWAF 94

Query: 84  KLRTDIKWQDGTPFSADDIVFSFQRSRNVPGSVASYSGALRT----VESVTAKDPATLIV 139
           KLR  +++ DG+ F ADD+V++ +R R+    +   SG  R+    ++SV+A DP T+++
Sbjct: 95  KLRDKVRFHDGSAFDADDVVYTIERIRDF---LKPPSGGFRSYVSGIKSVSAPDPLTVLI 151

Query: 140 KTNTPNPMLPLEIASIYIVSKHVGEKSKTEDYNAGRAVVGTGPYKFVSYVPGDRTVFERN 199
           +T+   P LPL  +S++++++       TE+ NAG    GTGPY+F S+  G+     RN
Sbjct: 152 ETDGAVPNLPLFFSSLFVMNRPSKGFETTENLNAGHPPNGTGPYRFESWSSGESLRLARN 211

Query: 200 PGYYGPKPLWEKVNYRFINNGAARTAALLAGDVDVIDKVAVTDVEKLRKDPKVSVYTYPG 259
             Y+G KP W KV +R I N AAR AAL  G+VDV   +   DV  L K     + +   
Sbjct: 212 DDYWGGKPAWSKVTFRVIENPAARVAALSTGEVDVAHAIPARDVASL-KQRGAKIASVGA 270

Query: 260 LRVLLLQPTFKAGPNEFITDNAGKPLEKNPLLDVRVRQALSLAINRKAIVDRVLQGTVTE 319
            RV  +Q          +TD +G+P+  NP  +  VR+AL+LA +R  +VD++L G  T 
Sbjct: 271 ARVNFVQFDVARDTLPGVTDKSGEPI-ANPFKNPLVRRALTLATDRGILVDKILAGYGTA 329

Query: 320 ANQWMPKGSFGYNPDVKDIAYNAEQAKKLLAEAGFPQGFQIAIHVPGDRYPQAPETVQAV 379
           A Q  P G  G + ++   A N ++AK LLA+AGFP GF + +  P  RYP   E++QAV
Sbjct: 330 AAQVFPNGLPGTSANLLPEAPNYDEAKMLLAKAGFPDGFNLVLAGPAGRYPGDAESLQAV 389

Query: 380 AQFWSRIGVKTKVEVVPWAVYSGRANKNEYAVSVIAWGNGT-GEAGYGLLQT-LTTPDAK 437
           AQ W+RIGV  +    P++V++ +    +Y V    W  GT GEA   +L + L +PD +
Sbjct: 390 AQSWARIGVNAQPAAAPFSVFNTKRAAGDYGV----WYGGTSGEAVDIILHSLLASPDPE 445

Query: 438 RGRGSNNWGRYSNESVDKALDAATVEFDAKRREAIFRHAAKLVTDDVGQIPLYHYQNI-- 495
           RG G+ N+G+Y NE+ D  L  A        R A    A +LV  D   IPLYH+ +I  
Sbjct: 446 RGTGALNFGKYRNEAFDAMLAGAESIAVGPERNAALAQATELVMADQPIIPLYHFHHIVG 505

Query: 496 WAAKKGLKVVPLLSDR--TTAMQVTP 519
           + ++ G     LL  R  TTAMQ  P
Sbjct: 506 YGSRIGSY---LLHPRGWTTAMQTLP 528