Pairwise Alignments

Query, 563 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

 Score = 73.9 bits (180), Expect = 7e-18
 Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 17/262 (6%)

Query: 24  LILLVANPILRLIWDSFHTADGT------LSFSSYAAALGRSRNLQALLNSFYLGVAVTA 77
           L+L V  P L +I  SF T D         +F +Y   L      + +L+SFY+ +  T 
Sbjct: 20  LVLFVLIPNLMIIGTSFLTRDEANLIKFAFTFENYTRLLDPLYG-KVMLHSFYMAIVATL 78

Query: 78  IAIALGVPLALAVSRTNMPARGFTHVSVLAAFVMPNFLGAIAWILLAGPNAGWLNRLWSE 137
           I + +G P A  V++     R F    ++  F   + +      ++ G   G LN+    
Sbjct: 79  ICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGLKIVLG-TQGILNQALMS 137

Query: 138 VLGTDRGPFNI-FSFWGLAFVIALYTYPLIYVFTKSALDLVSTELEDAASIHGAGKLRTL 196
            LG    P  I F+   +   +     P + +   SA++ +     +AA   GA K +TL
Sbjct: 138 -LGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTYIEAARDLGANKFQTL 196

Query: 197 TRVTLPLVLPSIVGAAILIFLESVALYGTPALIAIPAGL---NLATTQIVSFFEYPLKVE 253
            RV LPL +P I+G  +L+ L ++ ++    L+     L   N+  +Q+++  ++P    
Sbjct: 197 VRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVIKSQVLNARDWPF--- 253

Query: 254 QAAAFSMPILALTVVMLYLQRR 275
             AA S+ +     +MLY   R
Sbjct: 254 -GAATSIALTLAMAIMLYAYYR 274



 Score = 43.1 bits (100), Expect = 1e-08
 Identities = 45/251 (17%), Positives = 95/251 (37%), Gaps = 18/251 (7%)

Query: 313 LLTVVMPLIILVLASLSKAWGRGFSAGNLTFANFYNIFFEQLTVRSALVNTVTYSAVTAL 372
           +L V++P ++++  S              TF N+  +          ++++   + V  L
Sbjct: 21  VLFVLIPNLMIIGTSFLTRDEANLIKFAFTFENYTRLL--DPLYGKVMLHSFYMAIVATL 78

Query: 373 VCVAMGMCVAYATQRRITPFPTLIQFLALAPVAVPGLILAIGLYAAYA------------ 420
           +C+ +G   AY   +    +   + FL + P     LI   GL                 
Sbjct: 79  ICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGLKIVLGTQGILNQALMSL 138

Query: 421 ---GPPFSLYGTGALVVVAFTTRFLPIAVTACGAGVRSLNPELEEAVRILGGGRLTALGK 477
                P  +  T   V++      LP  +    + +  L+    EA R LG  +   L +
Sbjct: 139 GLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTYIEAARDLGANKFQTLVR 198

Query: 478 VVVPLLNKTLVGAFILVFVICTKELSTAVFLTGPASRVV-SVLTLDLSEQGNYESLAAMG 536
           V++PL    ++G  +LV +        A  L G  + ++ +V+   +    ++   AA  
Sbjct: 199 VILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVIKSQVLNARDWPFGAATS 258

Query: 537 VVLVVIVTLVV 547
           + L + + +++
Sbjct: 259 IALTLAMAIML 269