Pairwise Alignments

Query, 563 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 320 a.a., carbohydrate ABC transporter membrane protein 1, CUT1 family from Pseudomonas syringae pv. syringae B728a

 Score = 80.9 bits (198), Expect = 7e-20
 Identities = 69/293 (23%), Positives = 125/293 (42%), Gaps = 32/293 (10%)

Query: 13  AVWLFGT-LILLLILLVANPILRLIWDSFHTADGTLSFSSYAAALGRSRNL--------- 62
           A WLF T +++ L+L+ A P+LR  W  F   D  LS +   + +G S  L         
Sbjct: 28  AAWLFLTPMLVCLVLVAAWPLLRTFW--FSLTDADLSDTGSGSFVGLSNYLLYDGVIWSG 85

Query: 63  --------QALLNSFYLGVAVTAIAIALGVPLALAVSRTNMPARGFTHVSVLAAFVMPNF 114
                    A+ N+ Y  V    + + LG+ +AL ++      R      +L  + +P  
Sbjct: 86  VLVDPQWWNAVRNTLYFTVVSVGLEMVLGLMVALLLN-VKFTGRALVRALILIPWAIPTI 144

Query: 115 LGAIAWILLAGPNAGWLNRLWSEVLGTDRGPFNI-----FSFWGLAFVIALYTYPLIYVF 169
           + A  W  +     G +N +    LG    P         S W +  V    T P + + 
Sbjct: 145 VSAKIWSWMLNDQFGIINHMMLS-LGLIDAPLAWTADADLSMWAVIIVDVWKTVPFVTLL 203

Query: 170 TKSALDLVSTELEDAASIHGAGKLRTLTRVTLPLVLPSIVGAAILIFLESVALYGTPALI 229
             +AL ++ ++  +AA + G   +R   RVTLPL++P+++ AAI   L+S+ ++    ++
Sbjct: 204 MLAALQMLPSDCYEAARVDGIHPVRVFWRVTLPLLMPALLVAAIFRILDSLRVFDVIYVL 263

Query: 230 AIPAGLNL-----ATTQIVSFFEYPLKVEQAAAFSMPILALTVVMLYLQRRLL 277
              +   +     A   +V F +       +    + +  + ++ LYL RR L
Sbjct: 264 TSNSSSTMSMSVYARQHLVEFQDVGYGSAASTLLFLVVAVIAMLYLYLGRRQL 316