Pairwise Alignments

Query, 563 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 616 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  177 bits (450), Expect = 8e-49
 Identities = 144/583 (24%), Positives = 275/583 (47%), Gaps = 47/583 (8%)

Query: 2   RARIPNRMGDPAVWLFGTLILLLILLVANPILRLIWDSFHTADG------------TLSF 49
           R R+   + +P   +     LL   L+  PI+ ++ D+     G            TL++
Sbjct: 27  RYRLKVALREPTTLIGVLTALLFTYLIVVPIISIVLDAVRVQFGHERRLSKDVGDLTLNY 86

Query: 50  SSYAAALGRSRNL--QALLNSFYLGVAVTAIAIALGVPLALAVSRTNMPARGFTHVSVLA 107
              A     S +L  + L N+  + V   ++++ +G  LA  +SRT+M  R +   +++ 
Sbjct: 87  LDRALFSPVSADLFWRPLFNTLSVAVGAISLSLLVGTVLAWLISRTDMFGRRWFATALIV 146

Query: 108 AFVMPNFLGAIAWILL-----AGPNAGWLNRLWSEVLGTDRGPFNIFSFWGLAFVIALYT 162
            +++P +  A+AW  L      G   GWL     E  G     +  +  + +  ++AL+ 
Sbjct: 147 PYMLPAWTFALAWTTLFKNRTVGGQPGWL-----EATGLTPPDWLAYGQFPITIILALHY 201

Query: 163 YPLIYVFTKSALDLVSTELEDAASIHGAGKLRTLTRVTLPLVLPSIVGAAILIFLESVAL 222
            P + +   SAL    ++LED+A I GA + +   ++ LPL+ P+++ + +LIF + +  
Sbjct: 202 TPFVILLFGSALRRFDSQLEDSARILGAKRHQVALQIILPLMRPALLSSMVLIFAKCLGE 261

Query: 223 YGTPALIAIPAGLNLATTQIVSFFEYPLKVEQAAAFSMPILALTVVMLYLQRRLLAR-KG 281
           +G P ++ +P    + +T +        +   A   +  I+ + ++ L++  RL+   + 
Sbjct: 262 FGVPYVLGLPVKFEVLSTSLFRSIA-SRQTGVAGVIAGSIMLIGIITLWIDARLVREARR 320

Query: 282 FVSVSGKGGERRPFDVGAWKWVLLGYSALVSLLTVVMPLIILVLASLSKAWGRGFSAGNL 341
           FV++  KG   R   +G  +    G++A V LL+V +PL+ L+L+++ K   R F+  N 
Sbjct: 321 FVTIGSKGSMNRQSRLGRMRLPAAGFAATVFLLSVGLPLLTLLLSTVMKMPAR-FTLDNF 379

Query: 342 TFANFYNIFFEQLTVRSALV----------NTVTYSAVTALVCVAMGMCVAYATQRRITP 391
           T   +     + + +++ ++          NT+T   + ++    +G+ V Y   R  TP
Sbjct: 380 TLDYWIGRDLDTIALKTGILLSSDLWTAARNTLTIVGIASVTSGILGLLVGYVVIR--TP 437

Query: 392 FPTLIQFL---ALAPVAVPGLILA---IGLYAAYAGPPFSLYGTGALVVVAFTTRFLPIA 445
              L  +L      P  VPG+  A   + L+A   GP  +LYGT  ++V+A     +P A
Sbjct: 438 VRLLSVYLRQVTFLPYLVPGIAFAAAYLSLFAVPRGPLPALYGTVVILVLALIADQMPYA 497

Query: 446 VTACGAGVRSLNPELEEAVRILGGGRLTALGKVVVPLLNKTLVGAFILVFVICTKELSTA 505
             A  + +  L  + EEA ++ G G L  +  +V+P+   +LV   +L F+   K LS  
Sbjct: 498 SRAGISAMTQLGKDPEEAAQVAGAGWLRRMISIVIPIQKGSLVTGVLLPFISGIKGLSLF 557

Query: 506 VFLTGPASRVVSVLTLDLSEQGNYESLAAMGVVLVVIVTLVVG 548
           V L  P++ V++  +L L +   + + AA  VVL++      G
Sbjct: 558 VILAVPSTDVLTTYSLRLVDY--HYTQAANAVVLIIAAIAYCG 598