Pairwise Alignments

Query, 287 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 320 a.a., chaperon-like protein for quinone binding in photosystem II from Synechococcus elongatus PCC 7942

 Score = 47.8 bits (112), Expect = 3e-10
 Identities = 48/233 (20%), Positives = 94/233 (40%), Gaps = 7/233 (3%)

Query: 3   IVLGATGHVGSALAQALLARSEPVTVVTRDAGKTEALRRKGAHVAEVDVFDTPALHRVFQ 62
           +V+GATG +G  +A+  L     V  + R   +   LR  G  +   D+    +L    +
Sbjct: 4   LVVGATGTLGRQIARRALDEGHRVRCLVRSPKRGNFLREWGCDLVRGDLTQPESLTFALE 63

Query: 63  GSQRIFVLNPPAAPSTDTVA----EERRSMRAIVAALEGCRPEKIVAESVYGARPGKGIG 118
           G +   V++     STD+++    + +  +  I AA E    ++ V  S+  A   + + 
Sbjct: 64  GIEA--VIDAATTRSTDSLSCYDVDWQGKVNLIKAATE-AGVQRFVFCSIIDAEKHRDVP 120

Query: 119 DLGVLHELEQALQAGPAPFSALRAAYYMSNWDASLKTAREEGKVHTMYPPGFTLPMVAPH 178
            + + +  E+ L+     ++ LR A +M    A       EG+   +      +  ++  
Sbjct: 121 LMDIKYCTEEFLRQSGLNYTILRLAGFMQGLIAEFAIPVLEGRTAFITQDSDPIAYLSTL 180

Query: 179 DLGEFAAKLMLGPAESSGPHHVEGPARYSSADVAAAFAEALGRPVEAVQTPQA 231
           D+  FA   +  PA       V GP  +S  ++        G+  +  + P A
Sbjct: 181 DIARFAVAALTTPATEKQTLPVVGPKAWSGLEIFRLCERLSGKETKIARLPLA 233