Pairwise Alignments

Query, 339 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  121 bits (303), Expect = 3e-32
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 2/240 (0%)

Query: 46  HPLNIRAQEAAERIAKETKGRVEIKIFPNNQLGGDTDMLAQVRSGGIEFFTPSALVIATL 105
           HP  I A    +R+ +E  G+  +++FPN+ L  D  +L  + +G ++   PS       
Sbjct: 42  HPKGIAASLLEKRVNEEMNGKACMQVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKF 101

Query: 106 VPVAAINAVGFAFNDYTQVWAAMDGKLGAHVRGAIAKARLYAFEKMWDNGFRQTTSSKAA 165
                I  + F F D   V        G  ++ A+ +  +   E  W NG +Q +++K  
Sbjct: 102 TKKYRIFDLPFLFEDVDAVDRFQSSAKGEELKNAMTRRGVKGLE-FWHNGMKQISANKPI 160

Query: 166 VATAKDMDGLKIRVPVSPLSISMFKGLGAAPASLQFSEVYSALQTKIVDAQENPLPIIQV 225
           +  A D  GLK RV  S + ++ F+ +GA P  + F+E Y  LQTK++D QEN    I  
Sbjct: 161 LVPA-DAKGLKFRVQASDVLVAQFEQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYG 219

Query: 226 AKLFEVQKFCSLTNHIWDGYWFIANGRAWEALPEDLKTIVARAINDAGMQQREDIRKLNE 285
            K FEVQ   + TNH    Y  + + + W+ LP D++   A+ +N+  +++  +  K+ E
Sbjct: 220 QKYFEVQDGTTETNHGILDYLVVTSSKWWDGLPADVRDQFAKILNEVTIERNAESNKVEE 279