Pairwise Alignments

Query, 339 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  139 bits (350), Expect = 1e-37
 Identities = 88/316 (27%), Positives = 157/316 (49%), Gaps = 14/316 (4%)

Query: 9   ALRTLSALPAAGIVTALPRIARAAEFSYKYGNNLPLTHPLNIRAQEAAERIAKETKGRVE 68
           A+ TLSA  +    T L    +A+  S +Y +           A+  A+ + + ++G ++
Sbjct: 10  AILTLSAAASVNAATTLKMGMQASVGSVEYNS-----------AKMLADTLEEMSQGEIK 58

Query: 69  IKIFPNNQLGGDTDMLAQVRSGGIEFFTPSALVIATLVPVAAINAVGFAFNDYTQVWAAM 128
           + ++P+ QLG D  ML Q+  G ++        +   +P A    + +   D+  +    
Sbjct: 59  LALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMF 118

Query: 129 DGKLGAHVRGAIAKARLYAFEKMWDNGFRQTTSSKAAVATAKDMDGLKIRVPVSPLSISM 188
           +   G  VR  + +   +     W NG R+TTS++  + + +D  GLK+RVP +  +++ 
Sbjct: 119 ESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRP-LNSIEDFKGLKLRVPNAKQNLNY 177

Query: 189 FKGLGAAPASLQFSEVYSALQTKIVDAQENPLPIIQVAKLFEVQKFCSLTNHIWDGYWFI 248
            K  GA+P  + FSEVY ALQT  VD QENPLP I+  K +EVQK  ++T+HI +    I
Sbjct: 178 AKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVI 237

Query: 249 ANGRAWEALPEDLKTIVARAINDAGMQQREDIRKLNESVVGDLQAKGLSINRPAAESFRA 308
            +   W+ L +  K I+ +A+   G    + ++     +V   +++G+++  P  E FR 
Sbjct: 238 ISESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFRE 297

Query: 309 KLRESGFYGEWKGRFG 324
            ++    Y E+    G
Sbjct: 298 AMQP--LYKEFDSNIG 311