Pairwise Alignments

Query, 339 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 352 a.a., putative TRAP transporter extracellular solute binding protein, family 7 from Phaeobacter inhibens DSM 17395

 Score = 67.4 bits (163), Expect = 5e-16
 Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 25/218 (11%)

Query: 63  TKGRVEIKIFPNNQL-GGDTDMLAQVRSGGIEFFTPSALVIATLVPVAAINAVGFAFNDY 121
           + G +E+++F   QL     + L  V  G I+ +  ++   + L P   +  + +     
Sbjct: 56  SNGAIEVELFIGTQLCSNGAECLQGVADGSIDVYISTSGGASGLFPYVQVLDLPYLM--- 112

Query: 122 TQVWAAMDGKLGAHV-RGAIAKA-RLYAFEKMWDN----------GFRQTTSSKAAVATA 169
                  D ++  HV  G   +A R  A E   D+          G+R   ++K  VA  
Sbjct: 113 ------ADDRIAEHVLSGDFTRAMRQMALEDSGDSIRLMTIGNTGGWRNFANTKRRVAEP 166

Query: 170 KDMDGLKIRVPVSPLSISMFKGLGAAPASLQFSEVYSALQTKIVDAQENPLPIIQVAKLF 229
            DM+GLKIR  V+ L   + K LGA+P  + + E++++ QT +V+  +N +  I   K  
Sbjct: 167 ADMEGLKIRTVVADLPQELVKALGASPTPIPWPELFTSFQTGVVEGSKNGITDIMGMKFP 226

Query: 230 EV-QKFCSLTNHIWDG-YWFIANGRAWEALPEDLKTIV 265
           +   ++ +L  H + G  W+++N + +  +PED++ +V
Sbjct: 227 DAGLQYVTLDGHAYMGALWWMSN-KTFMDMPEDMRQVV 263