Pairwise Alignments

Query, 339 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 339 a.a., C4-dicarboxylate-binding periplasmic protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  106 bits (264), Expect = 1e-27
 Identities = 70/265 (26%), Positives = 122/265 (46%), Gaps = 2/265 (0%)

Query: 8   RALRTLSALPAAGIVTALPRIARAAEFSYKYGNNLPLTHPLNIRAQEAAERIAKETKGRV 67
           R L+T++ + A   V A      AA    K+ + +    P    A +  E + +   G  
Sbjct: 11  RPLKTVAKMLALASVFATSFNVFAAPVEIKFSHVVAENTPKGQMALKFKELVEQRLPGEY 70

Query: 68  EIKIFPNNQLGGDTDMLAQVRSGGIEFFTPSALVIATLVPVAAINAVGFAFNDYTQVWAA 127
            + +FPN+QL GD + LA +    ++F  PS            +  + F FND   V   
Sbjct: 71  TVSVFPNSQLFGDNNELAALLLNDVQFVAPSLSKFERYTKRLQVFDLPFLFNDMDAVNRF 130

Query: 128 MDGKLGAHVRGAIAKARLYAFEKMWDNGFRQTTSSKAAVATAKDMDGLKIRVPVSPLSIS 187
             G+ G  +  ++++  +     +  NG +Q T++   +    D  GLK RV  S +  +
Sbjct: 131 QQGEAGQALLNSMSRKGIVGLGYL-HNGMKQFTAN-TPLKQPSDAKGLKFRVMASDVLAA 188

Query: 188 MFKGLGAAPASLQFSEVYSALQTKIVDAQENPLPIIQVAKLFEVQKFCSLTNHIWDGYWF 247
            F  +GA P    FSEV++ LQT+ +D QEN        K +EVQ   + +NH    Y  
Sbjct: 189 QFDAVGAIPVKKPFSEVFTLLQTRAIDGQENTWSNTYSQKFYEVQSHITESNHGVLDYMV 248

Query: 248 IANGRAWEALPEDLKTIVARAINDA 272
           + +   W++LP D + ++  A++++
Sbjct: 249 VTSDAFWKSLPADKRKVIKEALDES 273