Pairwise Alignments
Query, 877 a.a., Excinuclease ABC subunit A paralog of unknown function from Variovorax sp. SCN45
Subject, 966 a.a., uvrABC system protein A from Phaeobacter inhibens DSM 17395
Score = 464 bits (1195), Expect = e-135
Identities = 284/736 (38%), Positives = 394/736 (53%), Gaps = 69/736 (9%)
Query: 138 FSPNTPQGACPTCHGLGRVFEVTEQSMVPDDSLSIRERAIAAWPPA---WHGQNLRDILV 194
FS N P GACP C GLG E+ +VPD +L I + A+A W + Q + I
Sbjct: 278 FSFNAPFGACPECDGLGVELFFDERLVVPDQNLKIYDGALAPWRKGKSPYFLQTIEAIAK 337
Query: 195 TMGIDVDKPWRNLPKKTRNWILFTEEQPTVPVYAGFTPAETRAAVRSKMEPSYQGTFMGA 254
+ + W++LP K + L + F E ++E ++G
Sbjct: 338 HYQFNKNTKWKDLPNKVQQVFLRGSGDEEIK----FRYDEGGRVY--EVERVFEGVIPNM 391
Query: 255 RKYVLHTFATTHSALMKNRAARFMVGGDCPQCHGKRLKREALSVRFAGHDIGEIARMSLA 314
+ + T S ++ R+ C C G RL+ EAL+V+
Sbjct: 392 ER----RYRETDSNWIREEFERYQNNRSCGVCEGYRLREEALAVKIG------------- 434
Query: 315 RLADVLRPVARGESPGAAAPVA-TRRASLRQAAPGKGASHASAPDVRRTPNQ-SAEKRIA 372
G P V + S+R+A + PNQ S +K+
Sbjct: 435 ---------PTGGRPDQLLHVGQVVQMSIREALAW----------IEDVPNQLSPQKQEI 475
Query: 373 AQRIAHEMLERVTTLLELGLGYLSLDRSTPTLSPGELQRLRLATQIRSNLFGVVYVLDEP 432
A+ I E+ ER+ L +GL YL+L R+ TLS GE QR+RLA+QI S L GV+YVLDEP
Sbjct: 476 ARAIVKEIRERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEP 535
Query: 433 SAGLHPADGEALVLALDTLKRSGNSLFVVEHDLDLMRRADWLVDVGPDAGEKGGLVLYSG 492
S GLH D + L+ L L+ GN++ VVEHD D +R AD++ D+GP AG GG V+ G
Sbjct: 536 SIGLHQRDNDRLLETLKNLRDQGNTVIVVEHDEDAIREADYVFDIGPGAGVHGGQVVSHG 595
Query: 493 PPEGLRHVAQSHTARYLFSAHAGPVRPPRTPRGW--LKLEGLTRNNLSNLAAAFPLGVLS 550
PE + S T +YL V R +K+ T NNL N+ A FPLG
Sbjct: 596 TPEMVAADEGSITGQYLSGTREIAVPSVRRKGNGKSVKVVKATGNNLKNVTAEFPLGKFL 655
Query: 551 AVTGVSGSGKSSLVSQALVELVAAHLG---HEPPPAEEEEGEEPAALASRTSGHIVQGME 607
V+GVSG GKS+L + L + + L P P E ++G+E
Sbjct: 656 CVSGVSGGGKSTLTIETLFKTASMRLNGARQTPAPCET-----------------IKGLE 698
Query: 608 GIRRLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFAGTRAAKARRFDPGRFSFNVAKGRC 667
+ +++ +DQ+PIGRTPRSN ATYTG F +R+ FAG +K R + PGRFSFNV GRC
Sbjct: 699 HLDKVIDIDQRPIGRTPRSNPATYTGAFTPIREWFAGLPESKTRGYKPGRFSFNVKGGRC 758
Query: 668 PTCEGEGFVSVELLFMPSVYAPCPACHGSRFNAQTLSVRLRDRTIADVLAMTVDEAHTFF 727
C+G+G + +E+ F+P VY C C G+R+N +TL ++ + ++IADVL MTV++A FF
Sbjct: 759 EACQGDGVIKIEMHFLPDVYVECETCKGARYNRETLEIQFKGKSIADVLDMTVEDAQQFF 818
Query: 728 EADVAIERPLQLLKAIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTLYVLDEPT 787
+A +I + L +GLGY+++GQ AT LSGGEAQR+KL+ EL + G TLY+LDEPT
Sbjct: 819 QAVPSIRDKMDALMRVGLGYIKVGQQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPT 878
Query: 788 TGLHPADVDKLTAQLDNLVDAGNTVIVIEHEMRLVAGCDWVIDMGPGAGGEGGRIVASGA 847
TGLH DV KL L LV+ GN+V+VIEH + ++ DW+ID+GP G GG IVA+G
Sbjct: 879 TGLHFEDVRKLLEVLHELVEQGNSVVVIEHNLDVIKTADWIIDIGPEGGDGGGEIVAAGT 938
Query: 848 PSDVARSKKSRTAPYL 863
P DVA +K S T YL
Sbjct: 939 PEDVAAAKGSHTGHYL 954
Score = 139 bits (350), Expect = 8e-37
Identities = 66/113 (58%), Positives = 89/113 (78%)
Query: 12 VRVRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRRYFESVAPYARR 71
+ VRGAREHNL+N+DVDIPRD LVV +G+SGSGKSSLAF T+YAE QRRY ES++ YAR+
Sbjct: 7 IEVRGAREHNLKNIDVDIPRDQLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66
Query: 72 LIDQVGVPAVDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRMLYSRAG 124
+D + P VD I GL PA++++Q+ + RS+VG+VT + LR+L++RAG
Sbjct: 67 FLDMMEKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARAG 119
Score = 121 bits (304), Expect = 2e-31
Identities = 76/199 (38%), Positives = 106/199 (53%), Gaps = 25/199 (12%)
Query: 690 CPACHGSRFNAQTLSVRLRDRT--------IADVLAMTVDEAHTFFE----------ADV 731
C C G R + L+V++ + V+ M++ EA + E ++
Sbjct: 416 CGVCEGYRLREEALAVKIGPTGGRPDQLLHVGQVVQMSIREALAWIEDVPNQLSPQKQEI 475
Query: 732 A------IERPLQLLKAIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTLYVLDE 785
A I L L +GL YL L + A LSGGE+QRI+LA+++ G LYVLDE
Sbjct: 476 ARAIVKEIRERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSGLTG-VLYVLDE 534
Query: 786 PTTGLHPADVDKLTAQLDNLVDAGNTVIVIEHEMRLVAGCDWVIDMGPGAGGEGGRIVAS 845
P+ GLH D D+L L NL D GNTVIV+EH+ + D+V D+GPGAG GG++V+
Sbjct: 535 PSIGLHQRDNDRLLETLKNLRDQGNTVIVVEHDEDAIREADYVFDIGPGAGVHGGQVVSH 594
Query: 846 GAPSDVARSKKSRTAPYLA 864
G P VA + S T YL+
Sbjct: 595 GTPEMVAADEGSITGQYLS 613
Score = 51.6 bits (122), Expect = 2e-10
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 23/125 (18%)
Query: 527 LKLEGLTRNNLSNLAAAFPLGVLSAVTGVSGSGKSSLVSQAL--------VELVAAHLGH 578
+++ G +NL N+ P L +TG+SGSGKSSL + VE ++A+
Sbjct: 7 IEVRGAREHNLKNIDVDIPRDQLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66
Query: 579 EPPPAEEEEGEEPAALASRTSGHIVQGMEGIRRLVRVDQKPIGRTPRSNLATYTGLFDHV 638
E+ + V + G+ + ++QK + PRS + T T ++D++
Sbjct: 67 FLDMMEKPD---------------VDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYL 111
Query: 639 RKLFA 643
R LFA
Sbjct: 112 RLLFA 116
Score = 41.2 bits (95), Expect = 3e-07
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 17/159 (10%)
Query: 12 VRVRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRRY---FESVAPY 68
V+V A +NL+NV + P + SG+SG GKS+L TL+ A R ++ AP
Sbjct: 632 VKVVKATGNNLKNVTAEFPLGKFLCVSGVSGGGKSTLTIETLFKTASMRLNGARQTPAP- 690
Query: 69 ARRLIDQVGVPAVDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRMLYSRAGDYPA 128
+ ++ L + + Q+ RS+ + T + +R + AG +
Sbjct: 691 ---------CETIKGLEHLDKVIDIDQRPIGRTPRSNPATYTGAFTPIREWF--AGLPES 739
Query: 129 RQPMLYAEDFSPNTPQGACPTCHGLGRVFEVTEQSMVPD 167
+ FS N G C C G G + E +PD
Sbjct: 740 KTRGYKPGRFSFNVKGGRCEACQGDGVI--KIEMHFLPD 776
Score = 31.6 bits (70), Expect = 2e-04
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 654 DPGRFSFNVAKGRCPTCEGEGFVSVELLFMPSVYAP 689
+P FSFN G CP C+G G VEL F + P
Sbjct: 274 EPRLFSFNAPFGACPECDGLG---VELFFDERLVVP 306