Pairwise Alignments
Query, 877 a.a., Excinuclease ABC subunit A paralog of unknown function from Variovorax sp. SCN45
Subject, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2
Score = 441 bits (1134), Expect = e-127
Identities = 269/733 (36%), Positives = 397/733 (54%), Gaps = 61/733 (8%)
Query: 138 FSPNTPQGACPTCHGLGRVFEVTEQSMVPDDSLSIRERAIAAWP---PAWHGQNLRDILV 194
FS N+P GAC C GLG E ++PD + I + A+A + + Q+L +
Sbjct: 266 FSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKCIADGAVALYRNFLDGYRSQHLAAVAN 325
Query: 195 TMGIDVDKPWRNLPKKTRNWILFTEEQPTVPVYAGFTPAETRAAVRSKMEPSYQGTFMGA 254
G V P ++L K+ + +++ P F + ++G +
Sbjct: 326 HFGFTVLTPIKDLSKEQLDILMYGS-----PEKIHFKVSNGSGDTEWSQNKPWEGLIPQS 380
Query: 255 RKYVLHTFATTHSALMKNRAARFMVGGDCPQCHGKRLKREALSVRFAGHDIGEIARMSLA 314
+ + T S + +FM CP+C GKRLK +AL+V+ I ++ +S++
Sbjct: 381 ----IRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDLSIS 436
Query: 315 RLADVLRPVARGESPGAAAPVATRRASLRQAAPGKGASHASAPDVRRTPNQSAEKRIAAQ 374
+ + + + E IA Q
Sbjct: 437 KAEEFFNNLKLTDK---------------------------------------EYEIAKQ 457
Query: 375 RIAHEMLERVTTLLELGLGYLSLDRSTPTLSPGELQRLRLATQIRSNLFGVVYVLDEPSA 434
+ E+ R+ L ++GLGYL+L R + TLS GE QR+RLATQI SNL GV+YVLDEPS
Sbjct: 458 -VIKEIKSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSI 516
Query: 435 GLHPADGEALVLALDTLKRSGNSLFVVEHDLDLMRRADWLVDVGPDAGEKGGLVLYSGPP 494
GLH D + L+ L L+ N+L VVEHD D + AD++VD+GP AG GG V+ G P
Sbjct: 517 GLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTP 576
Query: 495 EGLRHVAQSHTARYLFSAHAGPV-RPPRTPRGWLKLEGLTRNNLSNLAAAFPLGVLSAVT 553
+ S T +YL + + R +LKL +NNL +++ P GV + +T
Sbjct: 577 MEISKNKDSLTGKYLSGELKIEIPKNRRKSDKFLKLSNCRQNNLKDVSVEIPTGVFNVIT 636
Query: 554 GVSGSGKSSLVSQALVELVAAHLGHEPPPAEEEEGE---EPAALASRTSGHIVQGMEGIR 610
GVSGSGKS+L+ + L + E ++E GE E + ++ I
Sbjct: 637 GVSGSGKSTLIYENLYPALK-----EKIKSDESVGELDFEDQLYENTKEKCNLEINSEID 691
Query: 611 RLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFAGTRAAKARRFDPGRFSFNVAKGRCPTC 670
++V +DQ PIGRTPRSN ATYT +FD +R++FA T+ AK + + PGRFSFNV GRC C
Sbjct: 692 KVVVIDQSPIGRTPRSNPATYTKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENC 751
Query: 671 EGEGFVSVELLFMPSVYAPCPACHGSRFNAQTLSVRLRDRTIADVLAMTVDEAHTFFEAD 730
+G+G + +E+ F+P V+ C C G+R+N +TL V+ + ++I+DVL M+V+EA F+
Sbjct: 752 QGDGVIKIEMNFLPDVFVECEECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNI 811
Query: 731 VAIERPLQLLKAIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTLYVLDEPTTGL 790
I L+ L +GLGY++LGQ +T LSGGEAQRIKL EL + G+T+Y+LDEPTTGL
Sbjct: 812 PQISNKLKTLCDVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGL 871
Query: 791 HPADVDKLTAQLDNLVDAGNTVIVIEHEMRLVAGCDWVIDMGPGAGGEGGRIVASGAPSD 850
H DV KL L++LV+ GNTV+VIEH + ++ D +ID+GP G GG I+A+G P +
Sbjct: 872 HFHDVKKLIDVLNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEE 931
Query: 851 VARSKKSRTAPYL 863
+A+ K S T +L
Sbjct: 932 IAKCKLSHTGKFL 944
Score = 144 bits (362), Expect = 3e-38
Identities = 84/219 (38%), Positives = 123/219 (56%), Gaps = 24/219 (10%)
Query: 660 FNVAKGRCPTCEGEGFVSVELLFMPSVYAPCPACHGSRFNAQTLSVRLRDRTIADVLAMT 719
+N K E E F+ V L CP C G R + L+V++ D++I D+ ++
Sbjct: 384 YNETKSEYRRKELEKFMKVSL---------CPKCGGKRLKDKALAVKIEDKSIIDLTDLS 434
Query: 720 VDEAHTFF--------EADVA------IERPLQLLKAIGLGYLRLGQPATELSGGEAQRI 765
+ +A FF E ++A I+ L+ L +GLGYL L + + LSGGEAQRI
Sbjct: 435 ISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRI 494
Query: 766 KLATELQRAQRGDTLYVLDEPTTGLHPADVDKLTAQLDNLVDAGNTVIVIEHEMRLVAGC 825
+LAT++ G LYVLDEP+ GLH D KL L L + NT++V+EH+ +
Sbjct: 495 RLATQIGSNLTG-VLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNA 553
Query: 826 DWVIDMGPGAGGEGGRIVASGAPSDVARSKKSRTAPYLA 864
D+V+DMGPGAG GG +VA G P +++++K S T YL+
Sbjct: 554 DYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLS 592
Score = 126 bits (316), Expect = 7e-33
Identities = 57/111 (51%), Positives = 86/111 (77%)
Query: 14 VRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRRYFESVAPYARRLI 73
++GAREHNL+N+ + +PR+ L+V +G+SGSGKS++AF T+YAE QRRY ES++ YAR+ +
Sbjct: 6 IKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQFL 65
Query: 74 DQVGVPAVDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRMLYSRAG 124
+ P VD+I+GL PA+A+QQ+ + RS+VG+VT + LR+LY+R G
Sbjct: 66 GLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIG 116
Score = 55.8 bits (133), Expect = 1e-11
Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 14/213 (6%)
Query: 7 RSDRFVRVRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRRYFESVA 66
+SD+F+++ R++NL++V V+IP V +G+SGSGKS+L + LY + + +
Sbjct: 605 KSDKFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSDES 664
Query: 67 PYARRLIDQVGVPA-----VDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRMLYS 121
DQ+ ++ + V + Q RS+ + T + +R +++
Sbjct: 665 VGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIRQVFA 724
Query: 122 RAGDYPARQPMLYAEDFSPNTPQGACPTCHGLGRVFEVTEQSMVPDDSLSIRERAIAAW- 180
+ A+ FS N G C C G G + E + +PD + E A +
Sbjct: 725 ETKE--AKIKGYGPGRFSFNVKGGRCENCQGDGVI--KIEMNFLPDVFVECEECKGARYN 780
Query: 181 ----PPAWHGQNLRDILVTMGIDVDKPWRNLPK 209
+ G+++ D+L + + ++N+P+
Sbjct: 781 HETLEVKYKGKSISDVLNMSVEEAREHFKNIPQ 813
Score = 54.3 bits (129), Expect = 3e-11
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 529 LEGLTRNNLSNLAAAFPLGVLSAVTGVSGSGKSSLVSQALVELVAAHLGHEPPPAEEEEG 588
++G +NL N++ P L VTGVSGSGKS++ + +
Sbjct: 6 IKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYA-----------EGQRRYV 54
Query: 589 EEPAALASRTSGHI----VQGMEGIRRLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFA 643
E +A A + G + V +EG+ + + QK + PRS + T T ++D++R L+A
Sbjct: 55 ESLSAYARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYA 113
Score = 27.7 bits (60), Expect = 0.003
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 611 RLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFAGTRAAKA-----RRFDPGRFSFNVAKG 665
RLV ++ + R+ + T T + + K+++ A P FSFN G
Sbjct: 214 RLVEACERALERSGGLLIVTGTKNNEEIEKIYSSNLACPICGISFEELQPRMFSFNSPFG 273
Query: 666 RCPTCEGEG 674
C C G G
Sbjct: 274 ACEYCSGLG 282