Pairwise Alignments

Query, 877 a.a., Excinuclease ABC subunit A paralog of unknown function from Variovorax sp. SCN45

Subject, 956 a.a., excinuclease ABC, A subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  466 bits (1200), Expect = e-135
 Identities = 300/776 (38%), Positives = 405/776 (52%), Gaps = 76/776 (9%)

Query: 100 PGARSSVGSVTTLSSLLRMLYSRAGDYPARQPMLYAEDFSPNTPQGACPTCHGLGRVFEV 159
           PG   +V S  ++    R+        PA  P L    FS N+PQGACP C GLG V   
Sbjct: 239 PGQGETVHSTESVCPSCRI------SLPAPSPQL----FSFNSPQGACPHCSGLGSVDYF 288

Query: 160 TEQSMVPDDSLSIRERAIAAWP-----PAWHGQNLRDILVTMGIDVDKPWRNLPKKTRNW 214
               + P+  LS+   A+  W        W   +L  +    G+ +  P    P      
Sbjct: 289 EPALLAPNRGLSLNTGALLPWKNPRVFARWQA-DLEKLAKRFGVTLSTPLSAWPAAGLE- 346

Query: 215 ILFTEEQPTVPVYAGFTP----AETRAAVRSKMEPSYQGTFMGARKYVLHTFATTHSALM 270
           +LF  +       AG       A+TR   R   + ++      +    L      +    
Sbjct: 347 VLFHGDGSLPHAAAGDEGSGGGADTRKKGRRGADEAFGPPTGWSGVTQLLESGMQYGDAW 406

Query: 271 KNRAARFMVGGDCPQCHGKRLKREALSVRFAGHDIGEIARMSLARLADVLRPVARGESPG 330
           ++  +R+     CP CHG RL+ EALSVR    DI     +S+AR    LR         
Sbjct: 407 RDEMSRYRQSRPCPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRE-------- 458

Query: 331 AAAPVATRRASLRQAAPGKGASHASAPDVRRTPNQSAEKRIAAQRIAHEMLERVTTLLEL 390
                                    + D R T        + A+ +  E+  R+  ++ +
Sbjct: 459 ------------------------RSFDGRHT--------LVAEPLLKELTHRLEFMVNV 486

Query: 391 GLGYLSLDRSTPTLSPGELQRLRLATQIRSNLFGVVYVLDEPSAGLHPADGEALVLALDT 450
           GL Y+SL R+  TLS GE QR+RLA+Q+ S L GV YVLDEPS GLHP D E L+  L  
Sbjct: 487 GLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVTYVLDEPSIGLHPRDNERLIRTLRR 546

Query: 451 LKRSGNSLFVVEHDLDLMRRADWLVDVGPDAGEKGGLVLYSGPPEGLRHVAQSHTARYLF 510
           L++ GN++ VVEHD   +R AD ++++GP +G  GG V++SG    L   A + TARYL 
Sbjct: 547 LQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGTADTLTARYLR 606

Query: 511 SAHAGPVRPPRTPR-GWLKLEGLTRNNLSNLAAAFPLGVLSAVTGVSGSGKSSLVSQALV 569
                P+   R    G L L G+T NNL  L  + P GVL+ VTGVSGSGKSSLV   L 
Sbjct: 607 GEMTIPLPESRRKGDGALTLRGVTTNNLQGLDCSIPFGVLTCVTGVSGSGKSSLVVDTLY 666

Query: 570 ELVAAHLGHEPPPAEEEEGEEPAALASRTSGHIVQGMEGIRRLVRVDQKPIGRTPRSNLA 629
           + VA   G +         + P ++        + G++ I R+V +DQ PIGRTPRSN A
Sbjct: 667 KHVALARGIKV--------DSPGSIGG------IDGLDRIERIVAIDQTPIGRTPRSNPA 712

Query: 630 TYTGLFDHVRKLFAGTRAAKARRFDPGRFSFNVAKGRCPTCEGEGFVSVELLFMPSVYAP 689
           TYT +FD +R +FA T  A+ R + PGRFSFNV  GRC  C G+G + VE+ F+P V+  
Sbjct: 713 TYTKIFDEIRDIFAMTADARKRGYKPGRFSFNVRGGRCEACGGDGQLRVEMHFLPDVFVT 772

Query: 690 CPACHGSRFNAQTLSVRLRDRTIADVLAMTVDEAHTFFEADVAIERPLQLLKAIGLGYLR 749
           C  C G R+N +TL VR +   IA+VL +TV +A  FFE    +ER L +L+ +GL YLR
Sbjct: 773 CDVCKGRRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYPVLERRLGVLEDVGLEYLR 832

Query: 750 LGQPATELSGGEAQRIKLATELQRAQRGDTLYVLDEPTTGLHPADVDKLTAQLDNLVDAG 809
           LGQPAT LSGGEAQRIK++ EL +     TLY+LDEPTTGLH  +V KL   L  LVD G
Sbjct: 833 LGQPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEVGKLIRVLHQLVDRG 892

Query: 810 NTVIVIEHEMRLVAGCDWVIDMGPGAGGEGGRIVASGAPSDVARSKKSRTAPYLAR 865
            TV+VIEH   ++   D VID+GPG G  GGRIV++G P ++     S T  +L +
Sbjct: 893 ATVVVIEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIADSASVTGAFLVQ 948



 Score =  134 bits (337), Expect = 3e-35
 Identities = 65/117 (55%), Positives = 86/117 (73%)

Query: 8   SDRFVRVRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRRYFESVAP 67
           S   + + GAR+HNL+NVD+DIPRD LVV  G SGSGKS+LAF  +YAE QRRY ES++ 
Sbjct: 2   SKHCIHIEGARQHNLKNVDIDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESLSA 61

Query: 68  YARRLIDQVGVPAVDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRMLYSRAG 124
           YAR+ + Q+  PAVD I+GL PA++L+QQ  T   RS+VG+VT +   LR+ Y+R G
Sbjct: 62  YARQFLPQMDKPAVDKIEGLSPAISLEQQTSTRNPRSTVGTVTEVYDFLRVFYARLG 118



 Score = 89.7 bits (221), Expect = 7e-22
 Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 2/139 (1%)

Query: 378 HEMLERVTTLLE-LGLGYLSLDRSTPTLSPGELQRLRLATQI-RSNLFGVVYVLDEPSAG 435
           + +LER   +LE +GL YL L +   TLS GE QR++++ ++ + +L G +Y+LDEP+ G
Sbjct: 813 YPVLERRLGVLEDVGLEYLRLGQPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTG 872

Query: 436 LHPADGEALVLALDTLKRSGNSLFVVEHDLDLMRRADWLVDVGPDAGEKGGLVLYSGPPE 495
           LH  +   L+  L  L   G ++ V+EH+ D++  +D ++D+GP  GE GG ++ +G PE
Sbjct: 873 LHMHEVGKLIRVLHQLVDRGATVVVIEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPE 932

Query: 496 GLRHVAQSHTARYLFSAHA 514
            +   + S T  +L    A
Sbjct: 933 EIIADSASVTGAFLVQERA 951



 Score = 61.2 bits (147), Expect = 3e-13
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 13/168 (7%)

Query: 1   MQDSNDRSDRFVRVRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRR 60
           + +S  + D  + +RG   +NL+ +D  IP   L   +G+SGSGKSSL   TLY      
Sbjct: 613 LPESRRKGDGALTLRGVTTNNLQGLDCSIPFGVLTCVTGVSGSGKSSLVVDTLY------ 666

Query: 61  YFESVAPYARRLIDQVG-VPAVDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRML 119
             + VA      +D  G +  +D +D +   VA+ Q       RS+  + T +   +R +
Sbjct: 667 --KHVALARGIKVDSPGSIGGIDGLDRIERIVAIDQTPIGRTPRSNPATYTKIFDEIRDI 724

Query: 120 YSRAGDYPARQPMLYAEDFSPNTPQGACPTCHGLGRVFEVTEQSMVPD 167
           ++   D  AR+       FS N   G C  C G G++    E   +PD
Sbjct: 725 FAMTAD--ARKRGYKPGRFSFNVRGGRCEACGGDGQL--RVEMHFLPD 768



 Score = 45.8 bits (107), Expect = 1e-08
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 23/125 (18%)

Query: 527 LKLEGLTRNNLSNLAAAFPLGVLSAVTGVSGSGKSSLV--------SQALVELVAAHLGH 578
           + +EG  ++NL N+    P   L  V G SGSGKS+L          +  VE ++A+   
Sbjct: 6   IHIEGARQHNLKNVDIDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESLSAYARQ 65

Query: 579 EPPPAEEEEGEEPAALASRTSGHIVQGMEGIRRLVRVDQKPIGRTPRSNLATYTGLFDHV 638
             P     + ++PA          V  +EG+   + ++Q+   R PRS + T T ++D +
Sbjct: 66  FLP-----QMDKPA----------VDKIEGLSPAISLEQQTSTRNPRSTVGTVTEVYDFL 110

Query: 639 RKLFA 643
           R  +A
Sbjct: 111 RVFYA 115