Pairwise Alignments

Query, 647 a.a., Multidomain signal transduction protein including CheB-like methylesterase, CheR-like methyltransferase and BaeS-like histidine kinase from Variovorax sp. SCN45

Subject, 986 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  168 bits (425), Expect = 1e-45
 Identities = 135/473 (28%), Positives = 228/473 (48%), Gaps = 34/473 (7%)

Query: 56  NTGARRLKGYEAHEVIGGPL----SMFYPPEL-LEKNWPQHELEVAARVGQFQDEGWRLR 110
           + G  RL GY A + +G P+    S+ +P +L L +  P+ +         F+     + 
Sbjct: 535 SNGIERLTGYPASDFVGDPVRSYASLIHPDDLALARQHPEQD--------SFEGIYRLIN 586

Query: 111 KDGTRFWASVVITRLMGPDGKLRGFSKITRDLTERQKNNELLKASEERFRLIVEGVKDYA 170
            +G   +       L   D  +        D+T++      +   E    ++++ V D A
Sbjct: 587 AEGRTVFVRERARVLHERDDPIGWCDGFIWDVTDQALAKAEMLERERYLSMLLDNVID-A 645

Query: 171 IFMLDPSGYIVSWNAGAKATKGYEAHEIIGKHFSVFYP-PEVVASG-----FPEKELRVA 224
           I ++D  G I ++N  A+   GY + E++G++ S+  P P+  A       + ++    A
Sbjct: 646 IIIIDARGIIETFNHAAEQMFGYSSAEVLGQNLSMLMPEPDRSAHDGYLDHYTQRGTSRA 705

Query: 225 LEVGRYEDEGWRVRKDGSRFWASVVITSLVDASGRHRGFAKVTRDLTERRRISTLEDEGR 284
           LE  R   E   +R++G  F   + ++ +  +    R F  + RD+TER+RI  ++ E  
Sbjct: 706 LEQNR---ELTALRRNGDTFTIELRVSQI--SHHGERKFIGLVRDITERKRIERMKSE-- 758

Query: 285 RITTFLAMLGHELRNPLTPISNAVAIMERLGPGVDAKTLARMNSIIARQLRQITRLVDDL 344
                ++++ HELR PLT IS A+ ++     G  + ++ +M  I  +   ++ RLVDDL
Sbjct: 759 ----LVSIVSHELRTPLTSISGALGLIVGGALGEPSPSMRQMLDIAHQNSLRLGRLVDDL 814

Query: 345 LDVGRITSGKIHIESKPVKLSEVIDEALEMVRPSADAKHHAVVLRAPAEELWIAGDRARM 404
           LD+ ++ +GK+ +  +   L   +  A+   +  A A+H   +   P   L +  D  R+
Sbjct: 815 LDMDKLVAGKMALALRAHSLQVQLQLAVGANQGYA-AQHRVQLELLPTPSLQLMADDDRL 873

Query: 405 IQVVCNLLNNAVKFTPDGGRIEIWLRSDGRKAEIGVSDNGPGIAPEHLPRIFMLFAQGDQ 464
            QV+ NL++NAVKF+P  G + +     G    I V D GPGIAPE   RIF  F+Q D 
Sbjct: 874 QQVLANLISNAVKFSPQDGTVRLGGERRGDWVRIWVRDQGPGIAPEFRARIFQKFSQADS 933

Query: 465 EISRPQGGLGLGLTLVLQLVTLHGGEVNAYSKGIPGAGAEFIVRLPSVAAPLE 517
             +R +GG GLGL +  +L+    G +   S+  PG GA F   LP V A  E
Sbjct: 934 SDTRQKGGTGLGLAISKELIEHMHGRIGFDSE--PGHGACFWCELPLVPAAAE 984



 Score = 42.7 bits (99), Expect = 8e-08
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 33  LMIDSITDYAIFFLDPSGIVLSWNTGARRLKGYEAHEVIGGPLSMFY--PPELLEKNWPQ 90
           +++D++ D AI  +D  GI+ ++N  A ++ GY + EV+G  LSM    P       +  
Sbjct: 637 MLLDNVID-AIIIIDARGIIETFNHAAEQMFGYSSAEVLGQNLSMLMPEPDRSAHDGYLD 695

Query: 91  HELE-VAARVGQFQDEGWRLRKDGTRFWASVVITRLMGPDGKLRGFSKITRDLTERQK 147
           H  +   +R  +   E   LR++G  F   + ++++    G+ R F  + RD+TER++
Sbjct: 696 HYTQRGTSRALEQNRELTALRRNGDTFTIELRVSQI-SHHGE-RKFIGLVRDITERKR 751



 Score = 30.4 bits (67), Expect = 4e-04
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 117 WASVVITRLMGPDGKLRGFSKITRDLTERQKNNELLKASEERFRLIVEGVKDYAIFMLDP 176
           WA    T    PDG +     +T ++TE  +    L+ SE RFR +V  +        + 
Sbjct: 468 WAEGRATAERLPDGSVLWHGFVT-EITELMETTRALQKSESRFRAMVGNLPGVVYRCRND 526

Query: 177 SGYIVSW-NAGAKATKGYEAHEIIG----KHFSVFYPPEV-VASGFPEKE 220
               +S+ + G +   GY A + +G     + S+ +P ++ +A   PE++
Sbjct: 527 GERNMSYLSNGIERLTGYPASDFVGDPVRSYASLIHPDDLALARQHPEQD 576