Pairwise Alignments

Query, 647 a.a., Multidomain signal transduction protein including CheB-like methylesterase, CheR-like methyltransferase and BaeS-like histidine kinase from Variovorax sp. SCN45

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  167 bits (422), Expect = 5e-45
 Identities = 143/527 (27%), Positives = 243/527 (46%), Gaps = 33/527 (6%)

Query: 141  DLTERQKNNELLKASEERFRLIVEGVKDYAIFMLDPSGYIVSWNAGAKATKGYEAHEIIG 200
            D+TER+   E L  SE  F+ + +G     I  +D  G I+  N       G    E+  
Sbjct: 888  DVTERKSIEEELAVSEAHFKALFDGAT-IGIVNVDIKGLILDCNYQFCEDMGLSRDELRS 946

Query: 201  KH-FSVFYPPEVVASGFPEKELRVALEVGRYEDEGWRVRKDGSRFWASVVITSLVDASGR 259
               F V    +   +    KEL V  ++  Y  E   VR  G   W +V +++L+D+  +
Sbjct: 947  TPIFDVLSAQDKDVAKAQFKEL-VEGKIDHYRGERSFVRPSGEPLWMTVNVSTLLDSQNQ 1005

Query: 260  HRGFAKVTRDLTERRRIS----TLEDEGRRITT----FLAMLGHELRNPLTPISNAVAIM 311
                     D+TE + +S      +DE    +     FLA + HE+R P+    NA+  M
Sbjct: 1006 FESAVVSMVDMTELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTPM----NAIIGM 1061

Query: 312  ERL--GPGVDAKTLARMNSIIARQLRQITRLVDDLLDVGRITSGKIHIESKPVKLSEVID 369
             +L     +D K    +  I  R  + +  +++D+LD  +I +GK+ IE+   +L  +++
Sbjct: 1062 SQLCLQTQLDKKQKNYLEKI-ERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLE 1120

Query: 370  EALEMVRPSADAKHHAVVLR-APAEELWIAGDRARMIQVVCNLLNNAVKFTPDGGRIEIW 428
            +  +M    A  K   ++   AP     + GD  R+ QV+ NL+NNA+KFT  G   E+ 
Sbjct: 1121 DLSDMFSERAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERG---EVL 1177

Query: 429  L-------RSDGRKAEIGVSDNGPGIAPEHLPRIFMLFAQGDQEISRPQGGLGLGLTLVL 481
            L       ++D       V D+G G+  E   ++F  F Q D   +R  GG GLGL +  
Sbjct: 1178 LSLSLVEQQNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISK 1237

Query: 482  QLVTLHGGEVNAYSKGIPGAGAEFIVRLPSVAAPLERRKDKGGEA-GKMVLVVDDNRDAA 540
            QLV L GG +   S+   G+   F V+L   +    ++   G E  G  +LV DDN  A 
Sbjct: 1238 QLVELMGGSIGVESQLGHGSTFFFTVKLCISSG---QKLFVGQELDGMSILVADDNATAR 1294

Query: 541  ETMCLLVESLGYPTRTAFDGPSALEAIKVEQPELVLMDIGLPGFSGVEVARRVRREVEQP 600
            + M   +ES+G+   T   G  A+     ++  + L+D  +P   G+E A++++++ +  
Sbjct: 1295 DIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIETAKQIKQQTKNA 1354

Query: 601  PVLIAVTGFGQVSDRELSLEAGFYAHLTKPIDVSQLEGLLERLLGKA 647
            P ++ V+            + G   +++KPI  S+L   +   LG++
Sbjct: 1355 PRILMVSAHANQDFLTQIEQLGLAGYISKPISASRLLDGIMNALGRS 1401



 Score = 71.2 bits (173), Expect = 4e-16
 Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 15/201 (7%)

Query: 450  EHLPRIFMLFAQGDQEISRPQGGLGLG--LTLVLQLVTLHGGEVNAYSK-GIPGAGAEFI 506
            ++ PRI M+ A  +Q+       LGL   ++  +    L  G +NA  + GI        
Sbjct: 1352 KNAPRILMVSAHANQDFLTQIEQLGLAGYISKPISASRLLDGIMNALGRSGILPVRRHQD 1411

Query: 507  VRLPSVAAPLERRKDKGGEAGKMVLVVDDNRDAAETMCLLVESLGYPTRTAFDGPSALEA 566
               P +  PL+         GK +L+V+DN    E     +E +G     A +G  AL+ 
Sbjct: 1412 NIAPELLLPLK---------GKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDK 1462

Query: 567  IKVEQPELVLMDIGLPGFSGVEVARRVRR--EVEQPPVLIAVTGFGQVSDRELSLEAGFY 624
            +  +  +LVLMD  +P   G +  + +R+  E+ Q PV IA+T      D+E+ L AG  
Sbjct: 1463 LAQQSFDLVLMDCQMPVMDGYQATKAIRQRPELAQLPV-IAMTANAMAGDKEMCLRAGMN 1521

Query: 625  AHLTKPIDVSQLEGLLERLLG 645
             H+ KPI+V+ L   L + LG
Sbjct: 1522 DHIAKPIEVNLLYQTLLKYLG 1542



 Score = 43.1 bits (100), Expect = 1e-07
 Identities = 58/260 (22%), Positives = 104/260 (40%), Gaps = 45/260 (17%)

Query: 34  MIDSITDYAIFF-LDPSGIVLSWNTGARRLKGYEAHEVIGGPLSMFYPPELLEKNW---- 88
           +ID ++D + +  LDP G +   + G  ++ G     +      +F    L EKNW    
Sbjct: 396 LIDGMSDKSFYCSLDPDGQLAQVSEGVTKVLGIPPELLKRKYQRLFSANPLNEKNWEYTD 455

Query: 89  --------PQHELEVAARVGQFQDEGWRLRKDGTRFWASVVITRLMGPDGKLRGFSKITR 140
                   P H++E+    GQ +      R D       V +  L+   G+L     +  
Sbjct: 456 LALKGQNVPPHQIELVDAKGQAR------RLD-------VFMQPLVSDTGELMSVEMLFT 502

Query: 141 DLTERQK----NNELLKASEERFRLIVEGVKDYAIFMLDPSGYIVSWNAGAKATKGYEAH 196
           D+TE+      +N +L+A+ E            A+ ++D +G IV  N+  +   GY+A 
Sbjct: 503 DVTEQFSAAAWSNAVLEAAPE------------AMLIVDQNGQIVFSNSRCQQLFGYDAK 550

Query: 197 EIIGKHFSVFYPPEV--VASGFPEKELRVALEVGRYEDEGWR-VRKDGSRFWASVVITSL 253
            ++        P E+  + +G     LR   +         R ++ DG  F A + ++ L
Sbjct: 551 AMLALQIETLLPEELRHLHTGERLDFLREGRDRPMASARHVRALKSDGGEFVAEIALSIL 610

Query: 254 VDASGRHRGFAKVTRDLTER 273
                  R  A   RD+T++
Sbjct: 611 PSDFDGRRQVAASIRDMTQK 630



 Score = 35.0 bits (79), Expect = 3e-05
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 17/135 (12%)

Query: 42  AIFFLDPSGIVLSWNTGARRLKGYEAHEVIGGPLSMFYPPELLEKNWPQHELEVAARVGQ 101
           A+  +D +G ++  N+  ++L GY+A  ++   +    P EL         L    R+  
Sbjct: 524 AMLIVDQNGQIVFSNSRCQQLFGYDAKAMLALQIETLLPEEL-------RHLHTGERLDF 576

Query: 102 FQDEGWR----------LRKDGTRFWASVVITRLMGPDGKLRGFSKITRDLTERQKNNEL 151
            ++   R          L+ DG  F A + ++ L       R  +   RD+T++    + 
Sbjct: 577 LREGRDRPMASARHVRALKSDGGEFVAEIALSILPSDFDGRRQVAASIRDMTQKIMVEQK 636

Query: 152 LKASEERFRLIVEGV 166
           ++ SE RFR +V  +
Sbjct: 637 IRDSELRFRGLVTNI 651



 Score = 30.0 bits (66), Expect = 0.001
 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 2/133 (1%)

Query: 26   VTDADYRLMIDSITDYAIFFLDPSGIVLSWNTGARRLKGYEAHEVIGGPLSMFYPPELLE 85
            V++A ++ + D  T   I  +D  G++L  N       G    E+   P+      +  +
Sbjct: 901  VSEAHFKALFDGAT-IGIVNVDIKGLILDCNYQFCEDMGLSRDELRSTPIFDVLSAQDKD 959

Query: 86   KNWPQHELEVAARVGQFQDEGWRLRKDGTRFWASVVITRLMGPDGKLRGFSKITRDLTE- 144
                Q +  V  ++  ++ E   +R  G   W +V ++ L+    +         D+TE 
Sbjct: 960  VAKAQFKELVEGKIDHYRGERSFVRPSGEPLWMTVNVSTLLDSQNQFESAVVSMVDMTEL 1019

Query: 145  RQKNNELLKASEE 157
            +  ++ELL A +E
Sbjct: 1020 KLLSDELLVAKDE 1032