Pairwise Alignments

Query, 500 a.a., Circadian clock protein KaiC from Variovorax sp. SCN45

Subject, 508 a.a., RecA-superfamily ATPases implicated in signal transduction from Pseudomonas stutzeri RCH2

 Score =  493 bits (1270), Expect = e-144
 Identities = 248/483 (51%), Positives = 337/483 (69%), Gaps = 2/483 (0%)

Query: 16  TGVPGLDDVTAGGLPGGHVYLVEGTPGAGKTTLGLQFLLQGRSLGQKGLYVTLSETSEEL 75
           TG  GLDD+  GGL    +YL EG+PG+GKTT+ LQFLL+G   G++ LYVTLSET +EL
Sbjct: 20  TGSEGLDDILGGGLDPNRMYLYEGSPGSGKTTIALQFLLEGVRQGERVLYVTLSETKDEL 79

Query: 76  AQGAASHGWDLAGVEIFDLVSDD-DLSAEAEQSILQPSDFELGETIRGVMALVEREKPSR 134
              A  HGW L G+++F+LV+ +  L  + E ++L P + EL ET + V   V    PSR
Sbjct: 80  ELVAKRHGWSLDGIDVFELVTPETSLDPDLELTVLHPVEMELSETTQQVFDRVTETNPSR 139

Query: 135 VVFDSLSELRLLSQSSLRYRRQILALKRFFLKHGCTVLLLDDKSAASGDMHLHSIAHGVI 194
           V+FDSLSE+RLL+QS LRYRRQ+LALK FF    CTV+LLDD+++  GD+ LHSI+HGV+
Sbjct: 140 VIFDSLSEMRLLAQSPLRYRRQVLALKHFFTTRNCTVILLDDQTSEVGDLQLHSISHGVV 199

Query: 195 QLEQNTGTYGPDKRRMRVVKLRGVSFREGEHDFTLTRGGLRVFTRLVANEHGRTHAQEPL 254
            LEQ    YG ++RR+RV+K+RG+ FR G HDF + +GGLR++ RL+A EH  + + E  
Sbjct: 200 MLEQVAIDYGAERRRLRVIKMRGIQFRGGYHDFAIRKGGLRIYPRLIAAEHHSSFSGELA 259

Query: 255 SSGNPDLDRLLGGGLTPGTNLLFAGPAGVGKTTTAVSCVRASLQLGGKAAIFLFDEGTKT 314
           SSGNP LD++LGGGL  GTN L  G AGVGK++ A+S   A+ + G + A F+FDE   T
Sbjct: 260 SSGNPALDKMLGGGLERGTNALLVGAAGVGKSSLALSYAVAACKRGEQVAFFVFDENIAT 319

Query: 315 LLTRSRALGMGIDEYIANGQLTLNSVDPAEISAGQFSHHVRDAVERQGVTTVVIDTLNAY 374
           LL R RALG+ ++ +I  G L L  VDPAE+S G+F+  VR +VE +G   V++D+LN Y
Sbjct: 320 LLARGRALGLPMEPWIEQGLLHLQQVDPAELSPGEFTAAVRQSVEVRGAGLVILDSLNGY 379

Query: 375 LVAMPGNNFLLLQMHELLTYLNLQGITTIVVLSQHGLTGETPNDVDLSYLSDSMLQFRYF 434
           L AMP   FL+LQMHELL+YL  +G+ +I+VL+QHGL G     VD+SYLSD+++  RYF
Sbjct: 380 LHAMPDGRFLILQMHELLSYLGQKGVISIMVLAQHGLVGPMDTPVDISYLSDAVIMQRYF 439

Query: 435 EARGELLKAVSVVKSRTSAHATTIHQFRLGQGGLEIGEALTDFEGVMAGLPRYRG-RTRL 493
           E  G + +A+SVVK R+  H  T+ ++RL   GLE+G  L+ F G+++G P Y G  T+L
Sbjct: 440 EHAGVVRRALSVVKKRSGRHENTVREYRLSSAGLEVGPPLSHFSGILSGTPEYTGDATQL 499

Query: 494 LGD 496
           L D
Sbjct: 500 LTD 502