Pairwise Alignments

Query, 472 a.a., MATE efflux family protein from Variovorax sp. SCN45

Subject, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 95.5 bits (236), Expect = 3e-24
 Identities = 94/427 (22%), Positives = 187/427 (43%), Gaps = 15/427 (3%)

Query: 40  PMLLSNILQSLSGTLNNIYVGQMLGVGALAAVSSFFPVMFFFIAFIIGLGAGASVLIGQA 99
           PML   +       +++ ++GQ LGV  LAA     P+    I   +GLG   + +I +A
Sbjct: 20  PMLFGVLSLMSFQLVDSAFIGQ-LGVLPLAAQGFTMPIQMVIIGIQVGLGIATTAVISRA 78

Query: 100 WGARDAAKAKAVAGTTLTVGVLTGLVIAVFGGAFTTPMLASLGTPPDVLADSTRYARIML 159
            GA     AK + G  + +G +   +IA+       P+L  LG P  V A    Y    L
Sbjct: 79  IGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAIIDHYWLWWL 138

Query: 160 IAMPGLFVFLLATAMLRGVGDTVTPLLTLMISTLIGLVVTPALIRGWGGLPQLGVASGAW 219
            +     +     ++ R  G+T+ P   +M+++++ L++ P  I  +     LG+   A 
Sbjct: 139 ASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTF----DLGIDGAAI 194

Query: 220 ASVLSFTVATIWLGFRLRQRKSPLAPDAEFMRNLRIQPQLLKAVLKIGVPTGVQMIVVAL 279
           A++++F V    +  ++ QR+      +   ++L I  Q L A+  I  P  +  ++  L
Sbjct: 195 ATIIAFGVGIAIVAPKVAQRQW----TSYQWQDLNIS-QSLTALGHIMGPAMLSQLLPPL 249

Query: 280 AEVVLLSMVNSYGSSATAAYGAVNQVVAYVQFPAISIAITASILGAQAIGAGRANRLGAI 339
           + +    ++ S+G++A AA+   ++   +     +++ ++   +  + +GA     +  +
Sbjct: 250 SSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLGAKEITHIRQL 309

Query: 340 AKTALLMNVVLTGGLVVLGYLFSRHLMAFFITSEPVLEIAQTLLHIMLWSLVIFGMASAL 399
            + A    +     + ++ Y+F+  L     +   V +I    L I+  SL   G+   +
Sbjct: 310 VRIACQFVLGFQLLIALVTYVFATPLAELMTSETEVSQILNLHLVIVPISLGALGICMLM 369

Query: 400 SGIMRASGSVLVPTLISIVCILGVEVPVAYAMSHRLGLDGIWIAYPV-----TFGAMLLL 454
             +  A G   V   IS + +    +P  +  +H  G++G++I   V      + A L  
Sbjct: 370 VSVANALGKSYVALTISALRLFAFYLPCLWLGAHFYGIEGLFIGALVGNIIAGWAAWLAY 429

Query: 455 QTAYYQL 461
           Q A  QL
Sbjct: 430 QKALRQL 436



 Score = 47.0 bits (110), Expect = 1e-09
 Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 17/200 (8%)

Query: 259 LLKAVLKIGVPTGVQMIVVALAEVVLLSMVNSYGSSATAAYGAVNQVVAYVQFPAISIAI 318
           L K + ++  P    ++ +   ++V  + +   G    AA G    +   +    + + I
Sbjct: 10  LAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVGLGI 69

Query: 319 TASILGAQAIGAGRANRLGAIAKTALLMNVVLTGGLVVLGYLFSRHLMAFFITSEPVLEI 378
             + + ++AIGAG+      +    +++  +    + ++ YL  + L+      E V  I
Sbjct: 70  ATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAI 129

Query: 379 AQTLLHIMLWSLVIFGMASALSGIM--------RASGSVLVP-TLISIVCILGVEVPVAY 429
                H  LW L     ASA +G M        RA+G+ L+P TL+ +  +L + +   +
Sbjct: 130 ID---HYWLWWL-----ASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIF 181

Query: 430 AMSHRLGLDGIWIAYPVTFG 449
             +  LG+DG  IA  + FG
Sbjct: 182 IFTFDLGIDGAAIATIIAFG 201