Pairwise Alignments

Query, 632 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

Subject, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  228 bits (580), Expect = 6e-64
 Identities = 138/442 (31%), Positives = 228/442 (51%), Gaps = 26/442 (5%)

Query: 209 ALLAAGFFGGMALGMPIAFVLALSSLVFFMADPSLPMLVYSQQVM-AGTDHYVLLAIPFF 267
           ALL     G M +G+PIA  L LSS++F +      +   +Q +  A   HY LLAIPFF
Sbjct: 4   ALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAIPFF 63

Query: 268 VLAGLLMEANGMSSRLIELLLRMFGRLRGGLGLITITATAFFSGVSGSKLADIAAVGGII 327
           +LA   M   G++ R+I   + M G  RGGL + ++ A   F+ +SGS  A + A+G I+
Sbjct: 64  ILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIGSIV 123

Query: 328 MPAVRKTKQDPNETAGLLACTAVMAETIPPCINMIIMGFVANISIAGLFMAGLVPAVVLA 387
           +  + K        AG++     +   IPP I M++     N+S+  +F+ G+VP  +LA
Sbjct: 124 IAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPG-LLA 182

Query: 388 VSLAAVTIYVGTKIN--PDEAFDVRTPMFRLLGGALVALVMVAMIGKGVTSGVATSTEVS 445
             +  + IY+  +I   P + F       +    A   L++V +I  G+  G+ T TE +
Sbjct: 183 GLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTEAA 242

Query: 446 SFAVIYALVVGWLAFREL-----------TVKSVARLFVRSASMAG---------GILFI 485
           + A +Y+  +    +R++            +  V   FV   + A           ++FI
Sbjct: 243 AVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLMFI 302

Query: 486 VAAASSLSFALTIQQIPQYLSEFMIGFAHSYGSTMFVMLSVLIMIVFGAILEGAPALIIF 545
           +A A  L   LT ++IPQ ++E M+  +   G   F+++  LI++V G  +E +  L+I 
Sbjct: 303 IANALILKHVLTEERIPQMITESML--SAGLGPITFLIVVNLILLVGGQFMEPSGLLVIV 360

Query: 546 GPLLTPIASQLGVNPLHFGTVMVIAMGFGLFAPPVGLGLFATCAITGTQVKDVARPMLKY 605
            PL+ PIA  LG++P+H G +MV+ M  G+  PPVGL LF T  +    + +V +  L +
Sbjct: 361 APLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPW 420

Query: 606 LAVLFVTLVVLVLVPAFSTWLP 627
           + V+F+ L+++  VP  STWLP
Sbjct: 421 VGVMFLFLIIVTYVPWVSTWLP 442