Pairwise Alignments

Query, 345 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 89.0 bits (219), Expect = 2e-22
 Identities = 77/317 (24%), Positives = 136/317 (42%), Gaps = 12/317 (3%)

Query: 15  ALSLAAATTGGFSPYAFAQEKTVALRLSSSHVADLNSSHFAWSQLMQANLKKAVGEQIRI 74
           A S+ A T+  F+  A      + ++ S     D +    A S L++  + + +  +  +
Sbjct: 9   AASILAVTS--FNAAANCDPGEIVIKFSHVTNTDKHPKGIAAS-LLEKRVNEEMNGKACM 65

Query: 75  DYFPNNQLGKESDVVQQVKVGSIDMMLTGSSIWATVTPQLGMLDLGYLFDSYDHVARAID 134
             FPN+ L  +  V++ +  G + +     S +   T +  + DL +LF+  D V R   
Sbjct: 66  QVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQS 125

Query: 135 AGVGAKLNDMLARSTGCQIITWGAHYGARNVYTKQPVKSLADIRNVKLRVLPTPAFIETF 194
           +  G +L + + R     +  W  H G + +   +P+   AD + +K RV  +   +  F
Sbjct: 126 SAKGEELKNAMTRRGVKGLEFW--HNGMKQISANKPILVPADAKGLKFRVQASDVLVAQF 183

Query: 195 KIMGAIPTPISFGELYMAAQTGVVDGFEHDAGTVLANKLNEVVKHCWMTEHLFSPMVCVA 254
           + +GA P  +SF E Y   QT V+DG E+    +   K  EV      T H     + V 
Sbjct: 184 EQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVT 243

Query: 255 GKRAMDRVPAALRPAFLKAAADSTLQQRQIGN---ERSQQAIDDLKKTGITFTPMAKSER 311
             +  D +PA +R  F K   + T+++    N   E ++Q I +      T TP    E+
Sbjct: 244 SSKWWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYIIEAGGVVRTLTP----EQ 299

Query: 312 DQVRKEMETKLWAGFAK 328
            Q   +    +W  F K
Sbjct: 300 RQQWVDALKPVWQKFEK 316