Pairwise Alignments

Query, 345 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 325 a.a., periplasmic C4-dicarboxylate transport protein from Sinorhizobium meliloti 1021

 Score =  110 bits (275), Expect = 5e-29
 Identities = 66/246 (26%), Positives = 128/246 (52%), Gaps = 3/246 (1%)

Query: 64  LKKAVGEQIRIDYFPNNQLGKESDVVQQVKVGSIDMMLTGSSIWATVTPQLGMLDLGYLF 123
           +K+    +  ++ + + QLG+E D ++QV+ G I++     + +     +  +  L YLF
Sbjct: 51  VKERTAGRYSVEVYHSAQLGEEKDTIEQVRSGVIELNRVSMAPFNGTVKESIVPALPYLF 110

Query: 124 DSYDHVARAIDAGVGAKLNDMLARSTGCQIITWGAHYGARNVYTKQ-PVKSLADIRNVKL 182
            S +H+ + +D  +G ++      +    +  + A  GAR+ Y KQ P+ ++ D++ +K 
Sbjct: 111 RSEEHMHKVMDGAIGDQIKKAFEGAGVVVLAFYDA--GARSFYNKQKPINTVEDMKGLKF 168

Query: 183 RVLPTPAFIETFKIMGAIPTPISFGELYMAAQTGVVDGFEHDAGTVLANKLNEVVKHCWM 242
           RV+ +  F++    +GA  TP+ +GE+Y   +TGV+DG E++  +    K  EV K+  +
Sbjct: 169 RVIQSDIFVDMVAALGANATPMPYGEVYSGIETGVIDGAENNFPSYDTAKHFEVAKNYSL 228

Query: 243 TEHLFSPMVCVAGKRAMDRVPAALRPAFLKAAADSTLQQRQIGNERSQQAIDDLKKTGIT 302
            EH   P V V  K A D++    +  F +AA DS  +QR++   + +++   ++  G  
Sbjct: 229 DEHTILPEVFVMNKAAFDKLTPEDQEIFKQAAKDSVAKQRELWAAKVKESRAKVEAAGAK 288

Query: 303 FTPMAK 308
            T   K
Sbjct: 289 ITTPEK 294