Pairwise Alignments

Query, 345 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 324 a.a., substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  127 bits (320), Expect = 3e-34
 Identities = 83/302 (27%), Positives = 151/302 (50%), Gaps = 4/302 (1%)

Query: 16  LSLAAATTGGFSPYAFAQEKTVALRLSSSHVADLNSSHFAWSQLMQANLKKAVGEQIRID 75
           L+L  AT    +    A  +T    L  +HV + +      S      + K    + +ID
Sbjct: 6   LTLLGATATILASALSAHAQTA---LKWAHVYETSEPFHTESVWAAEEIAKRTEGRYKID 62

Query: 76  YFPNNQLGKESDVVQQVKVGSIDMMLTGSSIWATVTPQLGMLDLGYLFDSYDHVARAIDA 135
            FP +QLGKE+D+ Q +K+G++D++++GSS  A     +G+    Y+F    H+     +
Sbjct: 63  VFPASQLGKEADINQGLKLGTVDIIISGSSFAARDHAPIGVTYFPYIFRDPAHMIAYTKS 122

Query: 136 GVGAKLNDMLARSTGCQIITWGAHYGARNVYTKQPVKSLADIRNVKLRVLPTPAFIETFK 195
            V  +L      ++G  I T   +YG R+  + +P+   AD++ +K+RV   PA++   +
Sbjct: 123 DVFKRLAAGYEEASGNHI-TAVTYYGTRHTTSNRPIAKCADMQGLKMRVPDVPAYLAMPR 181

Query: 196 IMGAIPTPISFGELYMAAQTGVVDGFEHDAGTVLANKLNEVVKHCWMTEHLFSPMVCVAG 255
             GA  TPI+F E+Y+A Q G V+  E+   T+ A K  EV KH  +T H+   +  V  
Sbjct: 182 ACGANTTPIAFAEVYLALQNGTVEAQENPLTTIEAKKFFEVQKHIVLTGHIVDHLNTVVS 241

Query: 256 KRAMDRVPAALRPAFLKAAADSTLQQRQIGNERSQQAIDDLKKTGITFTPMAKSERDQVR 315
           K    ++  A +  F +   ++ ++  +I  ER ++ +   K+ GI  T + +++ ++  
Sbjct: 242 KNLWSQLSDADKQIFTEVMQEAAVRATKIIEEREKELVATFKERGIEVTEVDRADFEKTV 301

Query: 316 KE 317
            E
Sbjct: 302 NE 303