Pairwise Alignments

Query, 345 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 330 a.a., substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  103 bits (258), Expect = 5e-27
 Identities = 75/308 (24%), Positives = 131/308 (42%), Gaps = 4/308 (1%)

Query: 38  ALRLSSSHVADLNSSHFAWSQLMQANLKKAVGEQIRIDYFPNNQLGKESDVVQQVKVGSI 97
           A  L  +HV         ++      +  A G ++ +  +P +QLG  +++V  V++GSI
Sbjct: 26  ATELRYAHVGAEGDIQTVYAAQAAEGIAAATGGEVTVTVYPASQLGGVAEMVDGVRMGSI 85

Query: 98  DMMLTGSSIWATVTPQLGMLDLGYLFDSYDHVARAIDAGVGAKLNDMLARSTGCQIITWG 157
            M     +  A + P++ + +  +++    H   A D      L  +  +     +   G
Sbjct: 86  SMGHHDFASLARLVPEVAVFNAPFIYRDGAHALAATDPQSSPALQAINEKLIAQGVRIVG 145

Query: 158 AHY-GARNVYTKQPVKSLADIRNVKLRVLPTPAFIETFKIMGAIPTPISFGELYMAAQTG 216
             Y G R++ +  PVK+ AD+     R +P   ++   K  GAIPTP+   EL  A  TG
Sbjct: 146 RIYRGDRHISSNFPVKTPADLAGKPFRAVPLELWVSMVKGFGAIPTPVEVAELPTALMTG 205

Query: 217 VVDGFEHDAGTVLANKLNEVVKHCWMTEHLFSPMVCVAGKRAMDRVPAALRPAFLKAAAD 276
           VV G E+    + +N LNEV  H  MT H+ + +     +     +    R A  K   +
Sbjct: 206 VVVGQENPLTRIASNNLNEVQSHLSMTGHMRAVLAVFINEEVWQGLSEEQRTALTKVLDE 265

Query: 277 STLQQRQIGNERSQQAIDDLKKTGITFTPMAKSERDQVRKEMETKLWAGFAKQYPETGPL 336
              +  ++  E     + +LK  G+T    A+       +E   K+ A   + +P   PL
Sbjct: 266 EAQKSLKMATESEADLVKELKGRGMTVITEAEGLDVAAFRE---KVGAQIGQDFPNFAPL 322

Query: 337 FASINATR 344
              I A +
Sbjct: 323 IEQIEAVK 330